Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,095,923 – 11,096,036 |
Length | 113 |
Max. P | 0.814580 |
Location | 11,095,923 – 11,096,036 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.12 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -20.32 |
Energy contribution | -19.68 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.40 |
Mean z-score | -1.17 |
Structure conservation index | 0.70 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11095923 113 + 22407834 UUGU-----UACUUGUUUAGUUCUC--CUAGCUCACCUCUGCUUAAGCUCAUUGUGAUUGGUCAUGUCAGCGGAUAUUUGCUGAAUGAGCGACAGUAGAACCUUUUGCUCCAGUCUGCAU .(((-----..((..((((((..((--(.(((........)))...(((...(((((....)))))..)))))).....))))))..))..)))(((((..............))))).. ( -26.34) >DroVir_CAF1 5326 110 + 1 AAGUGCUUGCAU-------CC-GUU--UAUCCUUACCUCUGUUUAAGCUCAUUAUGGUUGCUCAUGUCCGCUGAUAUUUGCUGAAUGAGUGAGAGCAGCACCUUUUGCUCCAGCCGACAA ........(((.-------((-((.--....((((........))))......)))).)))...((((.((((....(..((.....))..)((((((......)))))))))).)))). ( -26.90) >DroPse_CAF1 5277 105 + 1 UCGG-----AAU-------CA-AUC--CAAUCCUACCUCUGUUUAAGCUCAUUAUGAUUGGUCAUGUCAGCGGAGAUUUGCUGAAUGAGCGACAGCAGGACUUUCUGCUCUAGCCUGCAU ..((-----(..-------..-.))--).......((((((((...(((((((((((....)))))(((((((....)))))))))))))))))).)))......(((........))). ( -29.50) >DroEre_CAF1 4359 115 + 1 UGGC-----CACUUAUUUAGUUCUCUUUUAGCUCACCUCUGCUUAAGCUCAUUAUGAUUGGUCAUGUCAGCGGAUAUUUGCUGAAUGAGCGACAGUAGAACCUUUUGUUCCAGUCUGCAC ((((-----((.((((........(((..(((........))).)))......)))).)))))).....((((((..(((((.....))))).....((((.....))))..)))))).. ( -25.34) >DroAna_CAF1 4248 104 + 1 UGGC-----AGA-------AAACU---CU-ACCCACUUUUGCUUAAGCUCAUUGUGGUUGCUCAUAUCCGCUGAGAUUUGCUGGAUGAGCGAGAGGAGCACCUUCUGCUCCAGCCGGCAG .(((-----...-------...((---(.-..((((....((....)).....))))..(((((..(((((........)).))))))))))).((((((.....)))))).)))..... ( -37.00) >DroPer_CAF1 4696 105 + 1 UCGG-----AAU-------CA-AUC--CAAUCCUACCUCUGUUUAAGCUCAUUAUGAUUGGUCAUGUCAGCGGAGAUUUGCUGAAUGAGCGACAGCAGGACUUUCUGCUCUAGCCUGCAU ..((-----(..-------..-.))--).......((((((((...(((((((((((....)))))(((((((....)))))))))))))))))).)))......(((........))). ( -29.50) >consensus UCGC_____AAU_______CA_CUC__CAAGCCCACCUCUGCUUAAGCUCAUUAUGAUUGGUCAUGUCAGCGGAGAUUUGCUGAAUGAGCGACAGCAGAACCUUCUGCUCCAGCCUGCAU .....................................((((((...(((((((((((....)))))(((((........)))))))))))...))))))......(((........))). (-20.32 = -19.68 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:31 2006