| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,085,227 – 11,085,319 |
| Length | 92 |
| Max. P | 0.725727 |
| Location | 11,085,227 – 11,085,319 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 81.87 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -11.05 |
| Energy contribution | -11.92 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11085227 92 - 22407834 AAAAGAA---AAAAAAAAACUAGUGAUU-----UGC--CAAGGAAUUGGCUGCUAUAAAAGCGUCGAACGCAUAAAGCCAACGCUUCAGUUGAUUUUUCAAA ....(((---(((....((((((((...-----.((--(((....))))).(((.((...(((.....))).)).)))...))))..))))..))))))... ( -20.00) >DroVir_CAF1 2045 88 - 1 ----UAA---AAAAGAAAAAAAA---AUAAAGUCGCAAC--A-A-AAAUCGUCUAUAAAAGCGGGCAGCGCAUAAAGCGAACGUUUCAGUUGAAAUUUCAAA ----...---.............---...((((..((((--.-.-.....((((........))))..(((.....))).........))))..)))).... ( -10.80) >DroSec_CAF1 1222 88 - 1 ----GAA---AAAAAAAAACUAGUGAUU-----UGC--CAAGGAAUUGGCUGCUAUAAAAGCGUCGAACGCAUAAAGCCAACGCUUCAGUUGAUUUUUCAAA ----(((---(((....((((((((...-----.((--(((....))))).(((.((...(((.....))).)).)))...))))..))))..))))))... ( -19.80) >DroSim_CAF1 1238 88 - 1 ----GAA---AAAAAAAAACUAGUGAUU-----UGC--CAAGGAAUUGGCUGCUAUAAAAGCGUCGAACGCAUAAAGCCAACGCUUCAGUUGAUUUUUCAAA ----(((---(((....((((((((...-----.((--(((....))))).(((.((...(((.....))).)).)))...))))..))))..))))))... ( -19.80) >DroEre_CAF1 1316 90 - 1 ----GAAAAAAAAAAAAAACUAGCAAU------UGC--AAAGGAAUUGGCUGCUAUAAAAGCGUCGAACGCAUAAAGCCAACGCUUCAGUUGAUUUUUCAAA ----((((((.............((((------((.--..(((..((((((..(((....(((.....)))))).))))))..))))))))).))))))... ( -17.94) >DroYak_CAF1 1240 88 - 1 ----AAA---UAAAAAAAACUAGCGAUU-----UGC--CAAGGAAUCGACUGCUAUAAAAGCGUCGAACGCAUAAAGCCAACGCUUCAGUUGAUUUUUCAAA ----...---................((-----((.--..((((((((((((........(((.....)))...((((....)))))))))))))))))))) ( -17.40) >consensus ____GAA___AAAAAAAAACUAGUGAUU_____UGC__CAAGGAAUUGGCUGCUAUAAAAGCGUCGAACGCAUAAAGCCAACGCUUCAGUUGAUUUUUCAAA ........................................((((((((((((........(((.....)))...((((....)))))))))))))))).... (-11.05 = -11.92 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:29 2006