Locus 3790

Sequence ID 2L_DroMel_CAF1
Location 11,072,226 – 11,072,316
Length 90
Max. P 0.585612
window5976

overview

Window 6

Location 11,072,226 – 11,072,316
Length 90
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.96
Mean single sequence MFE -24.20
Consensus MFE -11.40
Energy contribution -11.48
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -2.30
Structure conservation index 0.47
SVM decision value 0.10
SVM RNA-class probability 0.585612
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11072226 90 + 22407834
UGGUCAACUUUGGUCGGACUCGGUCGCAUCAAG----AGCCACUCAACCUCAAAGUUGAACGGCAUCGGCAUCACCUGCCACCGAUCUCACACU-----------
.(..((....))..)(((.(((((........(----((((..(((((......)))))..))).))((((.....))))))))))))......----------- ( -25.70)
>DroPse_CAF1 91326 80 + 1
UGGUCAACUUUGGUC------GGUCGCAUCAA------GCUACUCAACCUCAAAGUUGAACGG------CAUCACCUGCCACCGAUCUCACACUGCUU-------
.(((.......((((------(((.(((....------(((..(((((......)))))..))------)......))).))))))).......))).------- ( -21.04)
>DroEre_CAF1 63806 101 + 1
UGGUCAACUUUGGUCGGACUCGGUCGCAUCAAG----AGCCACUCAACCUCAAAGUUGAACGGCAUCGGCAUCACCUGCCACCGAUCUCACACCGCUCUCAUAGC
.(((.......((((((...............(----((((..(((((......)))))..))).))((((.....)))).))))))....)))(((.....))) ( -27.10)
>DroWil_CAF1 61490 88 + 1
UGGUCAACUUUGGGUUG--UCGGAGGCAUCAACCAACCUCUACUCAACCUCA-AGUUGAACGG------CAUCACCUGCCACCGAUCUCGCACUGCA--------
.(((((((((.((((((--..(((((..........)))))...)))))).)-))))))..((------((.....)))).))..............-------- ( -29.20)
>DroAna_CAF1 64001 86 + 1
UGGUCAACUUUAGUC------GGUCGCAUCAA------GCCACUCAACCUCAAAGUUGAACGG------CAUCACCUGCCACCGAUCUCACACCGCUUUCACAG-
.(((........(((------(((.(((....------(((..(((((......)))))..))------)......))).)))))).....)))..........- ( -21.12)
>DroPer_CAF1 90527 80 + 1
UGGUCAACUUUGGUC------GGUCGCAUCAA------GCUACUCAACCUCAAAGUUGAACGG------CAUCACCUGCCACCGAUCUCACACUGCUU-------
.(((.......((((------(((.(((....------(((..(((((......)))))..))------)......))).))))))).......))).------- ( -21.04)
>consensus
UGGUCAACUUUGGUC______GGUCGCAUCAA______GCCACUCAACCUCAAAGUUGAACGG______CAUCACCUGCCACCGAUCUCACACUGCUU_______
.((((.((....)).......(((.(((...........((..(((((......)))))..)).............))).))))))).................. (-11.40 = -11.48 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:23 2006