Locus 379

Sequence ID	2L_DroMel_CAF1
Location	1,183,760 – 1,183,920
Length	160
Max. P	0.902641

overview

Window 9

Location	1,183,760 – 1,183,880
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	93.25
Mean single sequence MFE	-41.18
Consensus MFE	-36.70
Energy contribution	-37.46
Covariance contribution	0.76
Combinations/Pair	1.11
Mean z-score	-1.20
Structure conservation index	0.89
SVM decision value	0.21
SVM RNA-class probability	0.633219
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1183760 120 - 22407834
CACCUGGUGUACGACAUCUUCAAGAACUUUGGUCCGAGUGCUUCGCUGGAAUCGCACAGCGUUGAGUGCUCCAAUGGACUGGACGGCUUCAUGUCCGCCUUGUACACCGUUACGCUGGAC
.....(((((((((................((((((((..((((((((........)))))..)))..)))....)))))(((((......)))))...)))))))))............ ( -42.80)
>DroSec_CAF1 17156 120 - 1
CAUCUGGUGUACGACAUCUUCAAGGACUUUGGUCCGAGUGCUUCGCUGGAAUCGCACAGCGUUGAGUGCUCCAAUGGACUGGACGGCUUCAAGUAUACCUUGUACAUAGUUACGAAGGAC
..((((((((((....(((....))).((..(((((((..((((((((........)))))..)))..)))....))))..)).........)))))))(((((......))))).))). ( -37.30)
>DroSim_CAF1 17107 120 - 1
CACCUGGUGUACGACAUCUUCAAGGACUUUGGUCCGAGUGCUUCGCUGGAAUCGCACAGCGUUGAGUGCUCCAAUGGACUGGAUGGCUUCAUGUCCGCCUUGUACACCGUUACGCUGGAC
.....(((((((((.........((((....))))(((..((((((((........)))))..)))..)))....((((((((....)))).))))...)))))))))............ ( -43.70)
>DroEre_CAF1 18225 120 - 1
CACCUGGUGUACGAUAUCUUCAAGGACUUUGGACCGAGUGCUUCGCUGGAAUCGCACAGCGUAGAGUGCUCCAAUGGACUGGACGGCUUCAUGUCCGCCCUGUACACCGUUACGCUGGAC
.....(((((((((.....))..((((..(((((((.(..((((((((........)))))..)))..)((((......))))))).)))).)))).....)))))))............ ( -42.00)
>DroYak_CAF1 17884 120 - 1
CACCUGGUGUACGAAAUCUUCAAGGACUUCGGUCCCAAUGCUUCGCUGGAAUCGCACAGCGUAGAGUGCUCCAAUGGACUGGACGGCUUCAUGUCCGCCUUGUACACCAUUACGCUGGAC
....((((((((((.........((((....))))....((((((.((((...((((........)))))))).))))..(((((......))))))).))))))))))........... ( -40.10)
>consensus
CACCUGGUGUACGACAUCUUCAAGGACUUUGGUCCGAGUGCUUCGCUGGAAUCGCACAGCGUUGAGUGCUCCAAUGGACUGGACGGCUUCAUGUCCGCCUUGUACACCGUUACGCUGGAC
....((((((((((.........((((....))))(((((((((((((........)))))..))))))))...(((((((((....)))).)))))..))))))))))........... (-36.70 = -37.46 +   0.76)

alignment

secondary structure

dotplot

Window 0

Location	1,183,800 – 1,183,920
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	95.42
Mean single sequence MFE	-40.90
Consensus MFE	-36.12
Energy contribution	-37.20
Covariance contribution	1.08
Combinations/Pair	1.03
Mean z-score	-1.51
Structure conservation index	0.88
SVM decision value	1.03
SVM RNA-class probability	0.902641
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1183800 120 - 22407834
GAUGUCGACGCAACAGCAGCAGUUAGACUAUAUAGAGCGCCACCUGGUGUACGACAUCUUCAAGAACUUUGGUCCGAGUGCUUCGCUGGAAUCGCACAGCGUUGAGUGCUCCAAUGGACU
(((((((..((....))...................(((((....))))).)))))))............((((((((..((((((((........)))))..)))..)))....))))) ( -40.90)
>DroSec_CAF1 17196 120 - 1
GAUGUCGACGCAACAGCAGCAGUUAGACUAUAUAGAGCGCCAUCUGGUGUACGACAUCUUCAAGGACUUUGGUCCGAGUGCUUCGCUGGAAUCGCACAGCGUUGAGUGCUCCAAUGGACU
(((((((..((....))...................(((((....))))).)))))))((((.((((....))))(((..((((((((........)))))..)))..)))...)))).. ( -42.90)
>DroSim_CAF1 17147 120 - 1
GAUGUCGACGCAACAGCAGCAGUUAGACUAUAUAGAGCGCCACCUGGUGUACGACAUCUUCAAGGACUUUGGUCCGAGUGCUUCGCUGGAAUCGCACAGCGUUGAGUGCUCCAAUGGACU
(((((((..((....))...................(((((....))))).)))))))((((.((((....))))(((..((((((((........)))))..)))..)))...)))).. ( -42.90)
>DroEre_CAF1 18265 120 - 1
GAUGUCGACGCAACAGCAGCAGCUGGACUAUAUCGAGCGCCACCUGGUGUACGAUAUCUUCAAGGACUUUGGACCGAGUGCUUCGCUGGAAUCGCACAGCGUAGAGUGCUCCAAUGGACU
(((((((((((..(((..((.(((.((.....)).)))))...))))))).)))))))....((..(.(((((....(..((((((((........)))))..)))..)))))).)..)) ( -40.90)
>DroYak_CAF1 17924 120 - 1
GAUGUCAACGCAACAGCAGCAGUUAGACUAUAUCGAGCGCCACCUGGUGUACGAAAUCUUCAAGGACUUCGGUCCCAAUGCUUCGCUGGAAUCGCACAGCGUAGAGUGCUCCAAUGGACU
...(((.......((((((((....((..((.(((.(((((....))))).))).))..))..((((....))))...))))..)))).....((((........)))).......))). ( -36.90)
>consensus
GAUGUCGACGCAACAGCAGCAGUUAGACUAUAUAGAGCGCCACCUGGUGUACGACAUCUUCAAGGACUUUGGUCCGAGUGCUUCGCUGGAAUCGCACAGCGUUGAGUGCUCCAAUGGACU
(((((((..((....))...................(((((....))))).)))))))((((.((((....))))(((((((((((((........)))))..))))))))...)))).. (-36.12 = -37.20 +   1.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:27 2006