Locus 3786

Sequence ID 2L_DroMel_CAF1
Location 11,058,660 – 11,058,756
Length 96
Max. P 0.999797
window5965 window5966

overview

Window 5

Location 11,058,660 – 11,058,756
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 97.43
Mean single sequence MFE -24.82
Consensus MFE -23.44
Energy contribution -23.63
Covariance contribution 0.19
Combinations/Pair 1.07
Mean z-score -2.57
Structure conservation index 0.94
SVM decision value 4.10
SVM RNA-class probability 0.999797
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11058660 96 + 22407834
GUGUUGCGUUGCACUUUCCUAUUUGUCCAGUUGUUGUUCGAUUGAACUUCGCAACAAAACCAACAAACGAUCGAAUAGGAAACAUAUGCAUAUUAA
....(((((.....(((((((((((((..((((((((((((.......))).)))))...))))....)).)))))))))))...)))))...... ( -24.20)
>DroSec_CAF1 47158 96 + 1
GUGUUGCGUUGCACUUUCCUAUUUGCCCAGUUGUUGUUCGAUUGAACUUCGCAACAAAACCAACAAACGGUCGAAUAGGAAACAUAUGCAUAUUAA
....(((((.....(((((((((((((..((((((((((((.......))).)))))...))))....)).)))))))))))...)))))...... ( -26.30)
>DroSim_CAF1 47317 96 + 1
GUGUUGCGUUGCACUUUCCUAUUUGCCCAGUUGUUGUUCGAUUGAACUUCGCAACAAAACCAACAAACGGUCGAAUAGGAAACAUAUGCAUAUUAA
....(((((.....(((((((((((((..((((((((((((.......))).)))))...))))....)).)))))))))))...)))))...... ( -26.30)
>DroEre_CAF1 49681 96 + 1
GUGUUGCGUUGCACUUUCCUAUUUGCCCAGUUGUUGUUCGAUUGAACUUCGCAACAAAACCAACAAACGUUCGAAUAGGAAACAUAUGCAUAUUAA
....(((((.....(((((((((((..(.((((((((((((.......))).)))))...))))....)..)))))))))))...)))))...... ( -23.10)
>DroYak_CAF1 49236 96 + 1
GUGUUGCGUUGCACUUUCCUAUUUGCCCAGUUGUUGUUCGAUUGAACUUCGCAACAAAACCAACAAACGGUCGAAUAGGAAACAUAUGCAUAUUAA
....(((((.....(((((((((((((..((((((((((((.......))).)))))...))))....)).)))))))))))...)))))...... ( -26.30)
>DroAna_CAF1 52230 96 + 1
GUGUUGCAUUGCACUUUCCUAUUUGCCCAGUUGUUGUUCGAUUGAACUUCGCAACAAAACCAACAAGCCCCCGAAUAGGAAACAUAUGCAUAUUAA
....(((((.....(((((((((((....((((((((((((.......))).)))))...)))).......)))))))))))...)))))...... ( -22.70)
>consensus
GUGUUGCGUUGCACUUUCCUAUUUGCCCAGUUGUUGUUCGAUUGAACUUCGCAACAAAACCAACAAACGGUCGAAUAGGAAACAUAUGCAUAUUAA
....(((((.....(((((((((((((..((((((((((((.......))).)))))...))))....)).)))))))))))...)))))...... (-23.44 = -23.63 +   0.19)

alignment

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secondary structure

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dotplot

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Window 6

Location 11,058,660 – 11,058,756
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 97.43
Mean single sequence MFE -25.07
Consensus MFE -23.50
Energy contribution -23.92
Covariance contribution 0.42
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.94
SVM decision value 2.79
SVM RNA-class probability 0.997067
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11058660 96 - 22407834
UUAAUAUGCAUAUGUUUCCUAUUCGAUCGUUUGUUGGUUUUGUUGCGAAGUUCAAUCGAACAACAACUGGACAAAUAGGAAAGUGCAACGCAACAC
......(((((...(((((((((.(.(((.((((((.(((.((((.......)))).))))))))).))).).))))))))))))))......... ( -23.40)
>DroSec_CAF1 47158 96 - 1
UUAAUAUGCAUAUGUUUCCUAUUCGACCGUUUGUUGGUUUUGUUGCGAAGUUCAAUCGAACAACAACUGGGCAAAUAGGAAAGUGCAACGCAACAC
......(((((...(((((((((.(.(((.((((((.(((.((((.......)))).))))))))).))).).))))))))))))))......... ( -25.90)
>DroSim_CAF1 47317 96 - 1
UUAAUAUGCAUAUGUUUCCUAUUCGACCGUUUGUUGGUUUUGUUGCGAAGUUCAAUCGAACAACAACUGGGCAAAUAGGAAAGUGCAACGCAACAC
......(((((...(((((((((.(.(((.((((((.(((.((((.......)))).))))))))).))).).))))))))))))))......... ( -25.90)
>DroEre_CAF1 49681 96 - 1
UUAAUAUGCAUAUGUUUCCUAUUCGAACGUUUGUUGGUUUUGUUGCGAAGUUCAAUCGAACAACAACUGGGCAAAUAGGAAAGUGCAACGCAACAC
......(((((...(((((((((.(..((.((((((.(((.((((.......)))).))))))))).))..).))))))))))))))......... ( -24.90)
>DroYak_CAF1 49236 96 - 1
UUAAUAUGCAUAUGUUUCCUAUUCGACCGUUUGUUGGUUUUGUUGCGAAGUUCAAUCGAACAACAACUGGGCAAAUAGGAAAGUGCAACGCAACAC
......(((((...(((((((((.(.(((.((((((.(((.((((.......)))).))))))))).))).).))))))))))))))......... ( -25.90)
>DroAna_CAF1 52230 96 - 1
UUAAUAUGCAUAUGUUUCCUAUUCGGGGGCUUGUUGGUUUUGUUGCGAAGUUCAAUCGAACAACAACUGGGCAAAUAGGAAAGUGCAAUGCAACAC
......(((((.(((((((((((....(.((.((((...(((((.(((.......)))))))))))).)).).))))))))...)))))))).... ( -24.40)
>consensus
UUAAUAUGCAUAUGUUUCCUAUUCGACCGUUUGUUGGUUUUGUUGCGAAGUUCAAUCGAACAACAACUGGGCAAAUAGGAAAGUGCAACGCAACAC
......(((((...(((((((((.(.(((.((((((.(((.((((.......)))).))))))))).))).).))))))))))))))......... (-23.50 = -23.92 +   0.42)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:12 2006