Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,057,467 – 11,057,568 |
Length | 101 |
Max. P | 0.500000 |
Location | 11,057,467 – 11,057,568 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 61.14 |
Mean single sequence MFE | -24.75 |
Consensus MFE | -9.39 |
Energy contribution | -11.95 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.21 |
Mean z-score | -2.15 |
Structure conservation index | 0.38 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11057467 101 + 22407834 GCAAGUUCGAGAGAGCAUGAGAGCGCUCCCCAACAAAUAAGAAAACAAAACGGGAA-AAAAGA-AUUAGUCAUCGCGCCGAUGGCUUAAUACUCUCAAAAAAA------------ ....((((....)))).((((((...((((.....................)))).-......-(((((((((((...))))))).)))).))))))......------------ ( -25.40) >DroEre_CAF1 48407 102 + 1 GUAAGUUCGAGAGAGCAUGAGAGCGCCCCCCAACAAAUAAGAAAACAAAACGGGAAUGAAAGA-AUUAGACGUCACGCCGACGUCCCAAUACUCUCGGCAAAU------------ ((..((((....)))).((((((.....(((....................))).........-....((((((.....))))))......))))))))....------------ ( -24.25) >DroAna_CAF1 50569 101 + 1 C-------GA--GCGC-CGAGAGCGU-CCCCAACAAAUAAG---ACAAAACGAGUAUGGAAAAUAUACUUCAGCAAGUCGAAGUUUGUACACUCUUUCUGGGUGACCCUUUCCUA .-------..--....-.(((((.((-(((((((((((..(---((.....(((((((.....)))))))......)))...))))))..........)))).))).)))))... ( -24.60) >consensus G_AAGUUCGAGAGAGCAUGAGAGCGC_CCCCAACAAAUAAGAAAACAAAACGGGAAUGAAAGA_AUUAGUCAUCACGCCGAAGUCUCAAUACUCUCAAAAAAU____________ ....((((....)))).((((((.....(((....................)))..............((((((.....))))))......)))))).................. ( -9.39 = -11.95 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:10 2006