Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,054,795 – 11,054,891 |
Length | 96 |
Max. P | 0.701763 |
Location | 11,054,795 – 11,054,891 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 84.45 |
Mean single sequence MFE | -24.18 |
Consensus MFE | -18.74 |
Energy contribution | -19.14 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.78 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701763 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11054795 96 - 22407834 UUAACUUUAUAGUGUGCUCUCUAUUUUUUUUUUUCGGGCUUAUAUUUCGUACUGGA--CUGUGCCGAAAGGCCGAUGGCCAUUGUGGUGGCUGUCAAC ........((((.(....).))))............((((....((((((((....--..))).)))))))))(((((((((....)))))))))... ( -24.30) >DroSec_CAF1 43267 81 - 1 UUUACUUGAUAGUUUA-----UAUUU------------CUUAUAUUUCGUACUGGACACUGUGCCGAAAGGCCGAUGGCCAUUGUGGUGGCUGUCAAC .....(((((((((((-----((...------------..))))..(((((.(((.((.((.(((....))))).)).))).))))).))))))))). ( -21.50) >DroSim_CAF1 43382 79 - 1 UUUACUUGAUAGUGUA-----UAUUU------------CUUAUAUUUCGUACUGGA--CUGUGCCGAAAGGCCGAUGGCCAUUGUGCUGGCUGUCAAC .....(((((((((((-----((...------------..)))))...(((((((.--(((((((....)))..)))))))..))))..)))))))). ( -24.00) >DroEre_CAF1 45770 91 - 1 UUUACUUGAUAUUGUGCUCUCUAUUU-----UUUCGGGCUUAUAUUUCGUACUGGA--CUGUGCCGAAAGGCCGAUGGCCAUUGUGGUGGCUGUCAAC ..(((..(((((...((((.......-----....))))..)))))..))).....--..(.(((....))))(((((((((....)))))))))... ( -27.80) >DroYak_CAF1 45333 91 - 1 UUUACUUGAUAUUGUGCUCUCUAUUU-----UUUCGGGCUUAAAUUUCGUACUGGA--CUGAGCCGAAAGGCCGUUGGCCAUUGUAGUGGCUGUCAAC .......((.(((..((((.......-----....))))...))).))......((--(.(.(((....))))...((((((....)))))))))... ( -23.30) >consensus UUUACUUGAUAGUGUGCUCUCUAUUU_____UUUCGGGCUUAUAUUUCGUACUGGA__CUGUGCCGAAAGGCCGAUGGCCAUUGUGGUGGCUGUCAAC ............................................................(.(((....))))(((((((((....)))))))))... (-18.74 = -19.14 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:09 2006