Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,050,672 – 11,050,767 |
Length | 95 |
Max. P | 0.795456 |
Location | 11,050,672 – 11,050,767 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 77.83 |
Mean single sequence MFE | -13.78 |
Consensus MFE | -2.60 |
Energy contribution | -4.60 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.19 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11050672 95 + 22407834 AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA-ACAGCAACAACAACGACAGCAGCAAACAGGCAACC--CCAA-AUGC-CAUUAACUUGUACG .((.(((..((((((.......(((((...........-..................))))).....((((...--....-.)))-)))))))))).)). ( -17.15) >DroSec_CAF1 39099 83 + 1 AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA-ACAGCAACAAC------------AAACAGGCAACC--CCAA-AUGC-CAUUAACUUGUACG .((.(((..((((((.......((((............-.))))......------------.....((((...--....-.)))-)))))))))).)). ( -14.22) >DroSim_CAF1 39172 83 + 1 AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA-ACAGCAACAAC------------AAACAGGCAACC--CCAA-AUGC-CAUUAACUUGUACG .((.(((..((((((.......((((............-.))))......------------.....((((...--....-.)))-)))))))))).)). ( -14.22) >DroEre_CAF1 41290 97 + 1 AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA-ACAGCAACAACAACGACAACAGCGAACAGCUAUCCCUCCAA-AUGC-CAUUAACUUGUUCG .(..(((..(((((((......((((............-.))))...............(((.....)))..........-....-))))))))))..). ( -13.32) >DroMoj_CAF1 50827 83 + 1 AGUUCAAUUGUUAAUGUAAAAAGCUUUACAAACGCAACCACA---GUAAC---------A-CGCACAGACAUGC---CUACAUACACAAACAAUU-UACG .((..(((((((..((((....((.........)).......---(((..---------.-.(((......)))---.))).))))..)))))))-.)). ( -10.00) >consensus AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA_ACAGCAACAAC_________A_CAAACAGGCAACC__CCAA_AUGC_CAUUAACUUGUACG .((.(((..(((((((......((((..............)))).......................(....).............)))))))))).)). ( -2.60 = -4.60 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:02 2006