Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,036,537 – 11,036,630 |
Length | 93 |
Max. P | 0.672285 |
Location | 11,036,537 – 11,036,630 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -19.58 |
Energy contribution | -20.47 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.09 |
Mean z-score | -1.88 |
Structure conservation index | 0.77 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11036537 93 - 22407834 ---------------------UCACCCCGAUAAUUAGCUUAGGGGUUCAACGAUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG ---------------------..(((((.............)))))......(((((((((((.((((....((((.........))))....)))).))))))....))))). ( -25.42) >DroPse_CAF1 40859 114 - 1 CUGGGCAAGACACCUCAAGUGUCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAGCAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG ....(((((((((.....)))))(((((.............)))))......)))).((((((.((((....((((.........))))....)))).)))))).......... ( -32.42) >DroGri_CAF1 28941 93 - 1 ---------------------UCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG ---------------------..(((((.............))))).......((((((((((.((((....((((.........))))....)))).))))))....)))).. ( -24.02) >DroWil_CAF1 22841 84 - 1 ---------------------ACACCUCGAUAAUUAGCUUAAGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGGGG--------- ---------------------...((((((.((.(((((((((.(((.((((..((.........))..)))))))...)).))))))).))......)))))).--------- ( -14.10) >DroMoj_CAF1 32010 93 - 1 ---------------------UCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAACGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG ---------------------..(((((.............))))).......((((((((((.((((....((((.........))))....)))).))))))....)))).. ( -24.02) >DroPer_CAF1 40663 114 - 1 CUGGGCAAGACACCUCAAGUGUCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG ....(((((((((.....)))))(((((.............)))))......)))).((((((.((((....((((.........))))....)))).)))))).......... ( -32.42) >consensus _____________________UCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG .......................(((((.............))))).......((((((((((.((((....((((.........))))....)))).))))))....)))).. (-19.58 = -20.47 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:58 2006