Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,035,384 – 11,035,523 |
Length | 139 |
Max. P | 0.926465 |
Location | 11,035,384 – 11,035,491 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.37 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -21.46 |
Energy contribution | -21.62 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.21 |
Mean z-score | -1.70 |
Structure conservation index | 0.79 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701803 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11035384 107 + 22407834 UAAUGAAUCAU-UCGAACAGAUCACAUGGGUCACGGCUAUAUCACGAAUCAGUGAUGCAAUGAAUCAAUGAUUCAAUAAAGCCAUGUCUCUCCGGAGUGU------------ACCCCCGA ...........-...............(((((((((((.(((...((((((.((((.......)))).)))))).))).))))...(((....)))))).------------)))).... ( -25.70) >DroSec_CAF1 23855 119 + 1 UAAUGAAUCAUUUCGCACAGAUCACAUGGGUCACGGUUAUAUCACGAAUCAGUGAUGCAAUGAAUCAAUGAUUCAAUA-AGCCAUGUCUGUCCGUAGUACCCCCUACUUGUGACUCCCGA ....(((....))).............(((((((((((.((((((......))))))...((((((...))))))...-))))..........((((......))))..))))))).... ( -27.60) >DroSim_CAF1 23884 119 + 1 UAAUGAAUCAUUUCGAACAGAUCACAUGGGUCACGGUUAUAUCACGAAUCAGUGAUGCAAUGAAUCAAUGAUUCAAUA-AGCCAUGUCUGUCCGUAGUACCCCCUACUUGUGACUCCCGA ...((((....))))............(((((((((((.((((((......))))))...((((((...))))))...-))))..........((((......))))..))))))).... ( -27.90) >DroEre_CAF1 25544 115 + 1 UAAUGAAUCACUUCAAACUAAUCACAUGGGUCACGGCUAUAUCACGAACCAGUGAUGCAAUAAAUCAAUGAUUCAAUA-AGCCCAGUCU----GGAGUACCCCCUAGUUGUGGCUCCCAA ...(((((((..........(((((.(((....((.........))..))))))))............)))))))...-(((((((.((----((........))))))).))))..... ( -25.65) >DroYak_CAF1 24729 114 + 1 -AAUGAAUCAUUUUCACCUGAUUACAUGGGUCACGGUUAUAUUACGAAUCAGUGAUGCAAUAAAUCAAUGAUUCAAUA-AGCCAUGUCU----GGAGUACCACCUAGUUGUGACUCCCAA -.((((((((........))))).)))(((((((((((.((((..((((((.((((.......)))).))))))))))-))))....((----((........))))..))))))).... ( -29.50) >consensus UAAUGAAUCAUUUCGAACAGAUCACAUGGGUCACGGUUAUAUCACGAAUCAGUGAUGCAAUGAAUCAAUGAUUCAAUA_AGCCAUGUCU_UCCGGAGUACCCCCUACUUGUGACUCCCGA ...........................(((((((((((.(((...((((((.((((.......)))).)))))).))).))))..(((((....))).)).........))))))).... (-21.46 = -21.62 + 0.16)
Location | 11,035,423 – 11,035,523 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.44 |
Mean single sequence MFE | -22.09 |
Consensus MFE | -12.52 |
Energy contribution | -14.12 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.57 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11035423 100 + 22407834 AUCACGAAUCAGUGAUGCAAUGAAUCAAUGAUUCAAUAAAGCCAUGUCUCUCCGGAGUGU------------ACCCCCGAA---CUU---CCACUUC-CACUUCCACUCACCUGGCAAA .....((((((.((((.......)))).))))))......((((.((......((((((.------------.........---...---.......-)))))).....)).))))... ( -21.25) >DroSec_CAF1 23895 111 + 1 AUCACGAAUCAGUGAUGCAAUGAAUCAAUGAUUCAAUA-AGCCAUGUCUGUCCGUAGUACCCCCUACUUGUGACUCCCGAA---CUU---CCACUUC-CACUUCGACUCACCUGGCAAA .....((((((.((((.......)))).))))))....-.((((.((..(((.((((......))))..(((.........---...---.)))...-......)))..)).))))... ( -24.92) >DroSim_CAF1 23924 105 + 1 AUCACGAAUCAGUGAUGCAAUGAAUCAAUGAUUCAAUA-AGCCAUGUCUGUCCGUAGUACCCCCUACUUGUGACUCCCGAA---CUU---CCACUUC-CA------CUCACCUGGCAAA .....((((((.((((.......)))).))))))....-.((((.((..((..((((......))))..(((.........---...---.)))...-.)------)..)).))))... ( -21.32) >DroEre_CAF1 25584 102 + 1 AUCACGAACCAGUGAUGCAAUAAAUCAAUGAUUCAAUA-AGCCCAGUCU----GGAGUACCCCCUAGUUGUGGCUCCCAAA---CCC---------CAAACUUCCACUCACCUGGCAAA .....(((.((.((((.......)))).)).)))....-(((((((.((----((........))))))).))))......---...---------.......(((......))).... ( -17.10) >DroYak_CAF1 24768 114 + 1 AUUACGAAUCAGUGAUGCAAUAAAUCAAUGAUUCAAUA-AGCCAUGUCU----GGAGUACCACCUAGUUGUGACUCCCAAGACACCCCUCGCCCUUCACCCUUCCACUCACCUGGCAAA .....((((((.((((.......)))).))))))....-.(((((((((----(((((..(((......))))))))..)))))............................))))... ( -25.88) >consensus AUCACGAAUCAGUGAUGCAAUGAAUCAAUGAUUCAAUA_AGCCAUGUCU_UCCGGAGUACCCCCUACUUGUGACUCCCGAA___CUU___CCACUUC_CACUUCCACUCACCUGGCAAA .....((((((.((((.......)))).))))))......((((.((......(((((.........................................))))).....)).))))... (-12.52 = -14.12 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:57 2006