Locus 3777

Sequence ID 2L_DroMel_CAF1
Location 11,032,434 – 11,032,530
Length 96
Max. P 0.628741
window5952

overview

Window 2

Location 11,032,434 – 11,032,530
Length 96
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 65.93
Mean single sequence MFE -19.92
Consensus MFE -12.28
Energy contribution -12.31
Covariance contribution 0.03
Combinations/Pair 1.08
Mean z-score -1.27
Structure conservation index 0.62
SVM decision value 0.20
SVM RNA-class probability 0.628741
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11032434 96 - 22407834
GCCAUGUGGCAUGCAACCAGUGAUGGCCAAAAAC----AAAACAGCCAAAAUGGAGCUGGAAACCAGAAGAAACUAUAAUAUUAUUGUUCAUUCGUUAAG
(((....)))......(((((..((((.......----......)))).......)))))......(((..(((.(((....))).)))..)))...... ( -17.22)
>DroSec_CAF1 20979 72 - 1
-------------CAACCAGUGGUGGCCAAAAAC----A-CCUAGCCAAAAUGGAGCUGGAAGCCAGAAGAAACUUAAC--UUAUUAGUUAA--------
-------------...(((((((((........)----)-))...((.....)).)))))...............((((--(....))))).-------- ( -16.10)
>DroSim_CAF1 20972 88 - 1
GCCAUGUGGCAUGCAACCAGUGGUGGCCAA-AAC----A-GCUAGCCAAAAUGGAGCUGGAAGCCAGAAGAAACUA-----UUAUUGUUCACA-AUAAAG
(((((.(((.......))))))))(((...-..(----(-(((..((.....)))))))...)))...........-----((((((....))-)))).. ( -22.20)
>DroEre_CAF1 22651 87 - 1
GCCAUGUGGCAUGCAACCAGUGGUGGCCAGACUUUGUGG-GUUGGCCAAAAUAAAGCUGGAAAAUAGGAAUCACUU-----AUCC---UUAUAUCC----
(((....)))......(((((..(((((((.((....))-.))))))).......))))).....((((.......-----.)))---).......---- ( -25.40)
>DroYak_CAF1 21781 90 - 1
GUCAUGUGGCAUGCAACCAGUGGUGGCCAAAAACC---A-CCUAGCCAAAAUAAAGCUGGAAAACAGAAGAUGCUA-----UUCUCGGUUAUUCCCUA-G
......((((..((.....))(((((.......))---)-))..))))..........(((((((.((.((.....-----.)))).))).))))...-. ( -18.70)
>consensus
GCCAUGUGGCAUGCAACCAGUGGUGGCCAAAAAC____A_CCUAGCCAAAAUGGAGCUGGAAACCAGAAGAAACUA_____UUAUUGGUUAUA_CC_A_G
(((....)))......(((((..((((.................)))).......)))))........................................ (-12.28 = -12.31 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:54 2006