Locus 3776

Sequence ID 2L_DroMel_CAF1
Location 11,029,821 – 11,029,934
Length 113
Max. P 0.567273
window5951

overview

Window 1

Location 11,029,821 – 11,029,934
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 78.03
Mean single sequence MFE -24.40
Consensus MFE -13.69
Energy contribution -15.19
Covariance contribution 1.50
Combinations/Pair 1.14
Mean z-score -1.91
Structure conservation index 0.56
SVM decision value 0.07
SVM RNA-class probability 0.567273
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11029821 113 + 22407834
AUAAAGUGGUACUGCCUACAGGUGGCAAACUAAAUAUCCCAUUAAAGAGGAACCCCCAUUAUUUGGUAACAUUUUUUGUUGACCACCAAUGGAACAACUACUACUCGUUAAUG
....(((((((.((((.......)))).........((((......).)))....(((((...((((((((.....)))).))))..)))))......)))))))........ ( -24.00)
>DroSec_CAF1 18357 107 + 1
AUAAAGCGGUACUACCUACAGGUGGCAAACAAAAUAUCCCAUUAAAGAGGAACCCCCAUUAUUUGGUAACACUUUUUGUUGGCCACCAAUAGAA------CUACUUUUUAAUG
..((((..((.(((......((((((.(((((((..((((......).)))....(((.....))).......))))))).))))))..))).)------)..))))...... ( -25.30)
>DroSim_CAF1 18692 107 + 1
AUAAAGUGCUACUACCUACAGGUGGCAAACAAAAUAUCCCAUUAAAGAGGAACCCCCAUUAUUUGGUAACAGUUUUUGUUGGCCACCAAAGGAA------CUACUUGUUAAUG
...(((((......(((...((((((.(((((((..((((......).)))....(((.....))).......))))))).))))))..)))..------.)))))....... ( -25.00)
>DroEre_CAF1 20026 90 + 1
AUAUAGUGGUACUAGCUACUGGUGGCAAAAUGCAUAUCCCAUUAU-----------------UUGGUAUCACUCUUGGUUGGUCUCCAAUGGAA------CUACUCGGUAGUG
....(((((((((((.((.(((..((.....)).....))).)).-----------------))))))))))).((.(((((...))))).))(------((((...))))). ( -23.30)
>consensus
AUAAAGUGGUACUACCUACAGGUGGCAAACAAAAUAUCCCAUUAAAGAGGAACCCCCAUUAUUUGGUAACACUUUUUGUUGGCCACCAAUGGAA______CUACUCGUUAAUG
.....((((......)))).((((((.(((((((....(((.......((....)).......))).......))))))).)))))).......................... (-13.69 = -15.19 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:53 2006