Locus 3774

Sequence ID 2L_DroMel_CAF1
Location 11,018,290 – 11,018,381
Length 91
Max. P 0.748028
window5948

overview

Window 8

Location 11,018,290 – 11,018,381
Length 91
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 75.90
Mean single sequence MFE -30.97
Consensus MFE -15.25
Energy contribution -16.00
Covariance contribution 0.75
Combinations/Pair 1.23
Mean z-score -1.94
Structure conservation index 0.49
SVM decision value 0.47
SVM RNA-class probability 0.748028
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11018290 91 + 22407834
UUGCAGGUCCUUGGCAGCUGGUGGGGU--CACCAUUCGGUGCAGGAUAUGUACCAGGGAUUCUUUUGGUGAGGAUUCGAAGAUCUUGAUC--UUU
.((((.(((((..(((.(..((((...--..))))..).)))))))).))))....((((((((.....))))))))((((((....)))--))) ( -30.00)
>DroSec_CAF1 6661 89 + 1
UUGCAGGUCCUUGGCAGCUGGUGGGGU--CACCAUUCGGUGCAGGAUAUGUACCAGGGAUUCUUUUGGUGAGGAUUUGGAGAUCUUGAU----UU
((.(((((((((....((..(.(((((--(.((....((((((.....)))))).)))))))).)..))))))))))).))........----.. ( -29.30)
>DroSim_CAF1 6764 89 + 1
UUGCAGGUCCUUGGCAGCUGGUGGGGU--CACCAUUCGGUGCAGGAUAUGUACCAGGGAUUCUUUUGGUGAGGAUUUGGAGAUCUUGAU----UU
((.(((((((((....((..(.(((((--(.((....((((((.....)))))).)))))))).)..))))))))))).))........----.. ( -29.30)
>DroEre_CAF1 8183 88 + 1
UUGCAGGUCCUUGGCAGCUGGUGGGGC--UACCAUUCGGUGCAGGAUAUGUACCAGGGCUUCCAAUGGUGAGGCUU-AGAGUCCUUGA----CUC
..((....((((((.(((((((((...--..))))).((((((.....))))))..)))).)))).))....))..-.(((((...))----))) ( -30.60)
>DroYak_CAF1 6875 92 + 1
UUGCAGGUUCUUGGCAGCUGGUGGGGU--CACCAUUCCAUACAGGAUAUGUACCAGGGAUUCUUAUGGUGAGUAUA-AGAGUCCUUGAUUUGCUC
..(((((((((((.....(((((....--))))).......))))).......((((((((((((((.....))))-)))))))))))))))).. ( -31.50)
>DroPer_CAF1 16076 85 + 1
UUCCACGUGAUGGGCGGCUGGUGGGGCUUCAACACGUGGCGCCC--CACAUCCCAGUAUUUC---UGGUGAGAG----CAGUUCUC-AUUGGUAC
..(((.((((.((((.(((.(((((((.(((.....))).))))--))).((((((.....)---))).)).))----).))))))-)))))... ( -35.10)
>consensus
UUGCAGGUCCUUGGCAGCUGGUGGGGU__CACCAUUCGGUGCAGGAUAUGUACCAGGGAUUCUUUUGGUGAGGAUU_GGAGAUCUUGAU____UC
...((((..(((.(((.(.(((((.......))))).).)))........(((((..(....)..)))))........)))..))))........ (-15.25 = -16.00 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:51 2006