Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,011,241 – 11,011,360 |
Length | 119 |
Max. P | 0.928913 |
Location | 11,011,241 – 11,011,360 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -23.71 |
Energy contribution | -23.02 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.17 |
Mean z-score | -1.75 |
Structure conservation index | 0.88 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11011241 119 + 22407834 UUUAGAAAUGCAAAGCUGACUUAAGAUUU-UUUGGUAGAUUUUCGGCGAUUUGUACUUUUGGUAUCUUGCAACACUGGAAGUCCGCCAAUUUUCCGACGCUGUGUUAAACCGCGUUAUUU ....(((((((((.(((((....((((((-......)))))))))))...)))))...(((((..(((.((....)).)))...))))).)))).(((((.((.....)).))))).... ( -25.60) >DroSec_CAF1 5994 103 + 1 ----------------AGAUUUCAGAUUU-UUUGGUAGAUUUUCGGUGACUUGUACUUUCAGUAUUUUGCAACACUGGAAGUCCGCCAAUUUUCCGACGCUCUAUUUAACCGCGUCAUUU ----------------........((...-.((((..(((((((((((....((((.....)))).......)))))))))))..))))...)).(((((...........))))).... ( -28.90) >DroSim_CAF1 6516 104 + 1 ----------------AGAUUCUAGAUUUUUUUGGUAGAUUUUCGGCGACUUGUACUUUCGGUAUUUUGCAACACUGGAAGUCCGCCAAUUUUCCGACGCUCUAUUUAACCGCGUCAUUU ----------------...............((((..(((((((((.(....((((.....)))).......).)))))))))..))))......(((((...........))))).... ( -24.70) >DroYak_CAF1 6106 119 + 1 UUUUGUAAUACAAAGCAUAUUUAAGAUUU-UUUGGUAGAUUUCUGGCGAUUUGUACUUUAGGUAUUUUUCAGCACUAGAAGUCCGCCAGUUUGCCGACGCUUUGUUAAACCGCGCCAUUU ....((...(((((((.............-..(((..(((((((((.(....((((.....)))).......).)))))))))..)))(((....))))))))))...)).......... ( -28.40) >consensus ________________AGAUUUAAGAUUU_UUUGGUAGAUUUUCGGCGACUUGUACUUUCGGUAUUUUGCAACACUGGAAGUCCGCCAAUUUUCCGACGCUCUAUUAAACCGCGUCAUUU ...............................((((..(((((((((.(....((((.....)))).......).)))))))))..))))......(((((...........))))).... (-23.71 = -23.02 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:50 2006