Locus 3771

Sequence ID 2L_DroMel_CAF1
Location 10,988,928 – 10,989,021
Length 93
Max. P 0.628331
window5944

overview

Window 4

Location 10,988,928 – 10,989,021
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 76.78
Mean single sequence MFE -27.93
Consensus MFE -14.85
Energy contribution -15.47
Covariance contribution 0.61
Combinations/Pair 1.19
Mean z-score -1.75
Structure conservation index 0.53
SVM decision value 0.19
SVM RNA-class probability 0.628331
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10988928 93 + 22407834
CGGCGUUGGCCAUACUCCACAACAUGGCCAUGGAGUGGGUCGAUCCAAGCAUUGGUAAGCUAACUAAUGCUAUAGAUCCUAAAGUGCUCAUUG
.((((..((((.(((((((...........)))))))))))((((..(((((((((......)))))))))...))))......))))..... ( -30.40)
>DroSec_CAF1 1097 93 + 1
CGGCGUUGGCCAUACUCCAUAACAUGGCCAUGGAGUGGGUCGAUCCAAGCAUUGGUAAGCUAACUAAUGCUAUAGAUCCUAAAGUGCUCAUAC
.((((..((((.((((((((.........))))))))))))((((..(((((((((......)))))))))...))))......))))..... ( -31.90)
>DroSim_CAF1 1096 93 + 1
CGGCGUUGGCCAUACUCCAUAACAUGGCCAUGGAGUGGGUCGAUCCAAGCAUUGGUAAGCUAACUAAUGCUAUAGAUGCUAAUGUGCUCAUAC
.((.(((((((.((((((((.........))))))))))))))))).(((((((((......)))))))))...((.((......)))).... ( -33.90)
>DroEre_CAF1 1083 89 + 1
CGGCGUUGGCCAUACUACACAAUAUGGCAAUGGAGUGGGCCGAUCCCAGCAUUGGUAAGCAGGCAG----GACGGAUCCUACAGAGCUUAAUG
.(((....((((((........))))))......((((((((.(((..((.(((.....))))).)----)))))..)))))...)))..... ( -25.70)
>DroYak_CAF1 1091 88 + 1
CGGCGUUGGCCAUACUCCACAACAUGGCAAUGGAGUGGGCUGAUCCCAGCAUUGGUAAGCUAAACG----AACGAGUCCUAAGGCGCUUAUU-
.((.((..(((.(((((((...........))))))))))..)).))......(((((((....(.----...).(((....))))))))))- ( -26.20)
>DroAna_CAF1 1064 91 + 1
CGGCGCUCUCCAUUCUUCACAAUAUGGCAAUGGAGUGGACUGAUCCCAGUAUAGGUAAUGUAUUUAAUUUAAUA-UUCCUUGAUUGGUU-UGA
((((.(.(((((((((.........)).))))))).)).)))...(((((..(((....(((((......))))-).)))..)))))..-... ( -19.50)
>consensus
CGGCGUUGGCCAUACUCCACAACAUGGCAAUGGAGUGGGCCGAUCCAAGCAUUGGUAAGCUAACUAAUGCUAUAGAUCCUAAAGUGCUCAUUC
.((.(((((((.(((((((...........))))))))))))))))............................................... (-14.85 = -15.47 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:46 2006