Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,987,237 – 10,987,328 |
Length | 91 |
Max. P | 0.592764 |
Location | 10,987,237 – 10,987,328 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -17.58 |
Energy contribution | -17.58 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.29 |
Mean z-score | -1.08 |
Structure conservation index | 0.73 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10987237 91 + 22407834 AGU-UUACAUACCGGCCCAUCACCACUACCUCGGGAAGUAGAGGAAUCAUCU------UCGUUAAGUGGACGCCUGCGUCCACGUCCCUGAUCAUCAG ...-.........((.......))........((((....(((((....)))------)).....(((((((....))))))).)))).......... ( -24.30) >DroSec_CAF1 4876 91 + 1 UGU-UUACAUACCGGCCCAUCACCACUUCCUCGAGAAGUAGAGGAACCAUCU------UCGUUAAGUGGACGCCUGCGUCCACGUCCCUGAUCAUCAG ...-.........(((..........((((((........))))))......------.......(((((((....)))))))))).(((.....))) ( -23.70) >DroSim_CAF1 4715 91 + 1 UGU-UAACAUACCGGUCCAUCACCACUUCCUCGAGGAGUAGAGGAAUCAUCU------UCGUUAAGUGGACGCCUGCGUCCACGUCCCUGAUCAUCAG ..(-((((.....(((.....)))..((((((........))))))......------..)))))(((((((....)))))))....(((.....))) ( -27.40) >DroEre_CAF1 6630 91 + 1 AAU-GUACAUACCGGUCCAUCACAACUUCCUCCGGAAUUAGAGGGCUCUUCU------UUGUUAAGUGGGCGCCUGCGUCCACGUCCCUGAUCAUCAG ...-.......((((................)))).(((((.((((.(....------..)....(((((((....))))))))))))))))...... ( -24.19) >DroWil_CAF1 3209 98 + 1 AAUAUUACUUACCGGCUCUUCAGCUCGCUUUCGUCCUUCAUCAGAAUCAUCGGAAUUCCUGCUAUAUGGACGCCUGCGUCCGCGUUCCUGAUCAUCCG ............(((....((((..((((((((...(((....)))....)))))............(((((....))))))))...))))....))) ( -23.00) >DroYak_CAF1 4238 91 + 1 UGU-CUACAUACCGGCCCAUCAUCACUUCCUCGGGAAUUGGAGGGUUCUUCU------UCGUUAAGUGGACGCCUGCGUCCUCGACCCUGAUCAUCAG .((-(........(((((..((....((((...)))).))..))))).....------.......(.(((((....))))).)))).(((.....))) ( -21.60) >consensus AGU_UUACAUACCGGCCCAUCACCACUUCCUCGGGAAGUAGAGGAAUCAUCU______UCGUUAAGUGGACGCCUGCGUCCACGUCCCUGAUCAUCAG .............((..(..........((((........)))).....................(((((((....))))))))..)).......... (-17.58 = -17.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:45 2006