| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,967,711 – 10,967,806 |
| Length | 95 |
| Max. P | 0.565282 |
| Location | 10,967,711 – 10,967,806 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.93 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -13.48 |
| Energy contribution | -15.37 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10967711 95 + 22407834 GCAGCUAUAGCUGCCACCAAUACCAGUGCAGAACGGCGGAAUACACA-----ACCGUUAAUACUGACACGCACACAUAUGC-------ACGAAACGCACUUUGCACU (((((....)))))..........((((((((...(((.........-----...((((....))))..(((......)))-------......)))..)))))))) ( -26.20) >DroSec_CAF1 50504 95 + 1 GCAGCUAUAGCUGCCACCAAUACCAGUGCAAAACGGCGGAAUACACA-----ACCGUUAAAGAUGACACGCACACAUAUGC-------ACGAAACGCACUUUGCACU (((((....)))))..........((((((((...(((.........-----...((((....))))..(((......)))-------......)))..)))))))) ( -25.90) >DroSim_CAF1 57368 95 + 1 GCAGCUAUAGCUGCCACCAAUACCAGUGCAAAACGGCGGAAUACACA-----ACCGUUAAUGAUGACACGCACACAUAUGC-------ACGAAACGCACUUUGCACU (((((....)))))..........((((((((...(((.........-----...((((....))))..(((......)))-------......)))..)))))))) ( -25.90) >DroEre_CAF1 51003 94 + 1 GCAGCUAUAGCUGCCACCAAUACCAGUGCAUAACGGCGGAAUACACA-----ACCGUUAAUGAUGGCACACACACUUAUGU-------CCGAAACGCACUUUGCAC- (((((....)))))..........(((((.((((((..(......).-----.))))))....(((.(((........)))-------)))....)))))......- ( -24.80) >DroYak_CAF1 52747 94 + 1 GCAGCUAUAGCUGCCACCAAUACCAGUGCAAAACGACGGAAUACACA-----ACCGUUAAUAAUGACACGCACACUUAUGC-------CCGUAACGCACUUUGCAC- (((((....)))))...........(((((((.((((((........-----...((((....))))..(((......)))-------))))..))...)))))))- ( -22.60) >DroAna_CAF1 65290 99 + 1 GCAGCUAU------CACACAUACAUACGCACAUGCAC-GCAUACACACGCAUACCGUUAAAGAUGACAAGCACACCUAGGGCUCCAAAACGAAGCGCACUUUGCAC- ((((((.(------((.....((....((....))..-((........)).....))......)))..))).......(.(((.(.....).))).)....)))..- ( -14.00) >consensus GCAGCUAUAGCUGCCACCAAUACCAGUGCAAAACGGCGGAAUACACA_____ACCGUUAAUGAUGACACGCACACAUAUGC_______ACGAAACGCACUUUGCAC_ (((((....)))))...........(((((((...(((.................((((....))))..(((......))).............)))..))))))). (-13.48 = -15.37 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:33 2006