Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,963,139 – 10,963,231 |
Length | 92 |
Max. P | 0.677112 |
Location | 10,963,139 – 10,963,231 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 80.50 |
Mean single sequence MFE | -17.16 |
Consensus MFE | -7.81 |
Energy contribution | -8.53 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.20 |
Mean z-score | -2.18 |
Structure conservation index | 0.46 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10963139 92 + 22407834 CUGUGGAAAGUUUAUUUAUUGACGGAACAACUUUGACCUUUCCGCAUCACCUC-AUUAACUUUUUUGUGGUUUAGUGAAUUAAUUACCUUUCC .(((((((((.(((....(((......)))...))).))))))))).....((-(((((((.......)).)))))))............... ( -16.80) >DroSec_CAF1 45907 92 + 1 CUGUGGAAAGUUCAUUUAUUGACUGAACAACUUUGACCUUUCCGCAUCACCUC-AUUACAUUUUUUGUGGUUUAGUGAAUUAAUUACCUUCCU .(((((((((.(((....(((......)))...))).)))))))))((((...-((((((.....))))))...))))............... ( -21.80) >DroSim_CAF1 52830 78 + 1 CUGUGGAAAGUUCAUUUAUUG--------------ACCUUUUCGCAUCACCUU-AUUACAUUUUUUGUGGUUUAGUGAAUUAAUUACCUUCCC .(((((((((.(((.....))--------------).)))))))))((((...-((((((.....))))))...))))............... ( -19.80) >DroEre_CAF1 46502 91 + 1 CUGUGGAAAGUUUAUUUAUUGACUAA-AAACUUUCACCUUUCCACAUCAUCCC-AUUACAUUUUUAGCGGUUUACGGAAUUAAUUACCGUCCU .(((((((((................-..........))))))))).......-............(((((..............)))))... ( -13.91) >DroYak_CAF1 48126 93 + 1 CUGUGGAAUGUUCAAUUAUUGACUACACAACUUUGACCUUUCAAAAGCAUCCCAAUUGCAUUUUUUGCGGUUUACGGAAUUAAUUACCGUCCU ((((((.(((((......(((......))).(((((....)))))))))).))(((((((.....))))))).))))................ ( -13.50) >consensus CUGUGGAAAGUUCAUUUAUUGACUAAACAACUUUGACCUUUCCGCAUCACCUC_AUUACAUUUUUUGUGGUUUAGUGAAUUAAUUACCUUCCU .(((((((((.(((...................))).)))))))))......................(((..............)))..... ( -7.81 = -8.53 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:28 2006