Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,962,753 – 10,962,853 |
Length | 100 |
Max. P | 0.820702 |
Location | 10,962,753 – 10,962,853 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.74 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -14.57 |
Energy contribution | -14.80 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.22 |
Mean z-score | -2.38 |
Structure conservation index | 0.58 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10962753 100 - 22407834 GCAUGUGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGUAUUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU-GGCUUGAAUAGGGAAU ....((((-((((.....)))))))).(((((((..(((.........)))..)))))))............((((((.(((...-..)))..))))))... ( -26.10) >DroSec_CAF1 45552 100 - 1 GCAUGCGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAAGUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU-GGCUUGAAUGGGGAAU ....((((-((((.....)))))))).(((((((....((((......)))).)))))))............((((((.(((...-..)))..))))))... ( -28.40) >DroSim_CAF1 52503 100 - 1 GCAUGCGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAAGUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU-GGCUUGAAUGGGGAAU ....((((-((((.....)))))))).(((((((....((((......)))).)))))))............((((((.(((...-..)))..))))))... ( -28.40) >DroEre_CAF1 46102 83 - 1 GCAUGUGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAGGUAGACGAGCUUGUCUCUCGUUAAUCUUAUAACCUUAUAAAGAA------------------ ....((((-((((.....)))))))).(((((..((.(((((.((((((.......)))))).)))))))..))))).......------------------ ( -26.60) >DroYak_CAF1 47706 100 - 1 GCAUGUGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAAGUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU-GGCUUGAAUGGGGAAU ....((((-((((.....)))))))).(((((((....((((......)))).)))))))............((((((.(((...-..)))..))))))... ( -26.50) >DroMoj_CAF1 164775 87 - 1 GCGGGCAGCAAUUAAUUAGACGCCGCUAAAAACAAUAACAAAAGAUGAGCUUGUCGCUCAUUAAUCUUAUGACCUCAUAAACACCAC--------------- ((((..................)))).................(((((((.....)))))))....(((((....))))).......--------------- ( -15.57) >consensus GCAUGCGG_CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAAGUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU_GGCUUGAAUGGGGAAU ....((((.((((.....)))))))).(((((..((((.....((((((.......))))))....))))..)))))......................... (-14.57 = -14.80 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:27 2006