| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,945,662 – 10,945,760 |
| Length | 98 |
| Max. P | 0.605791 |
| Location | 10,945,662 – 10,945,760 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 72.31 |
| Mean single sequence MFE | -25.33 |
| Consensus MFE | -8.41 |
| Energy contribution | -8.33 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10945662 98 - 22407834 UGACGA-GUGAAUUGGCGGCUGACAAACACAGGAAAUUGUUUCAAAGUUG-----CUGGGCAGUAAAGAAGACUGUUUAUUGCUGCAAGUUUUGAAACGCCAAU ......-....((((((..(((.......)))......((((((((((((-----(..(((((((((.(....).))))))))))))).))))))))))))))) ( -30.20) >DroSec_CAF1 38166 98 - 1 UGACGA-GUGAAUUGGCGGCUGACAAACACAGGAAAUUGUUUCAAAGUUG-----CUGGGCAGUAAAGGAGACUGUUUAUUGCUGCAAGUUUUGAAACGCCAAU ......-....((((((..(((.......)))......((((((((((((-----(..((((((((((....))..)))))))))))).))))))))))))))) ( -32.10) >DroSim_CAF1 44794 98 - 1 UGACGA-GUGAAUUGGCGGCUGACAAACACAGGAAAUUGUUUCAAAGUUG-----CUGGGCAGUAAAGAAGACUGUUUAUUGCUGCAAGUUUUGAAACGCCAAU ......-....((((((..(((.......)))......((((((((((((-----(..(((((((((.(....).))))))))))))).))))))))))))))) ( -30.20) >DroEre_CAF1 38861 87 - 1 UGACGA-GUGAAUUGGCGGCUGACGAAUACAGGAAGUUCUGUCAAAGUUG-----CUAGGCAGUGA---GCACUGUUCAUUGCUGAAAAUUUCAAA-------- ......-.((((.(((((((((((((((.......)))).)))..)))))-----)))((((((((---((...))))))))))......))))..-------- ( -26.30) >DroYak_CAF1 39970 87 - 1 UGACGA-GUGAAUUGGCGGCUGACAAAUGCAGGAAAUUGUUUCAUAGUUG-----CUGGGCAGUUA---AGACUGUUUAUUGCUGGAAAAUUGCAA-------- ...(.(-(..(.(..(((((((......((((....))))....))))))-----)..)(((((..---..)))))...)..)).)..........-------- ( -19.70) >DroAna_CAF1 46601 88 - 1 UGUUUACAUCAAUUGAAGGCUGUCAAAGGAAGGAAAUUGGCCAAAAGGUAACUAACUUGGUAAA-ACAAACACUGCU-AGUGCUUGUU--------------AU ...((((..........((((.((........))....))))...((((.....)))).))))(-((((.(((....-.))).)))))--------------.. ( -13.50) >consensus UGACGA_GUGAAUUGGCGGCUGACAAACACAGGAAAUUGUUUCAAAGUUG_____CUGGGCAGUAAAGAAGACUGUUUAUUGCUGCAAGUUUUGAA______AU ................((((.(((((..........)))))...............((((((((.......))))))))..))))................... ( -8.41 = -8.33 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:22 2006