Locus 3759

Sequence ID 2L_DroMel_CAF1
Location 10,932,181 – 10,932,282
Length 101
Max. P 0.644604
window5917

overview

Window 7

Location 10,932,181 – 10,932,282
Length 101
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.67
Mean single sequence MFE -19.00
Consensus MFE -13.68
Energy contribution -13.85
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.72
SVM decision value 0.23
SVM RNA-class probability 0.644604
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10932181 101 - 22407834
G--AACUUCUUCAAAAGCGCAUAAAAAAUCAAUGGCAAGUGCCAUGUGCGCAAUAAAUGUCAGCUACAAACGA-----AAACUUCACAUGUUUUUCUUUCUUCUUCCC
.--.............((((((.........(((((....)))))))))))................(((.((-----((((.......)))))).)))......... ( -17.20)
>DroPse_CAF1 43815 98 - 1
G-AAGCACCACCAAAAGCGCAUAAAAAACCAAUGGCUGGAGCCAUGUGCGCAAUAAAUGUCAGCUUCAAACGAGAGCGAAACUUCGCACGAUUUU-UUUU--------
(-((((..((......((((((.........(((((....)))))))))))......))...)))))........((((....))))........-....-------- ( -24.60)
>DroEre_CAF1 25493 99 - 1
G--AACUUCUUCAAAAGCGCAUAAAAAAUCAAUGGCAAGUGCCAUGUGCGCAAUAAAUGUCAGCUACAAACGA-----AAACUUCACAUGUUUUUCUUUCGCC--CCC
.--.............((((((.........(((((....)))))))))))...........((...(((.((-----((((.......)))))).))).)).--... ( -18.30)
>DroYak_CAF1 25332 97 - 1
G--AACUUCUUCAAAAGCGCAUAAAAAAUCAAUGGCAAGUGCCAUGUGCGCAAUAAAUGUCAGCUACAAACGA-----AAACUUCACAUGUUUUUCUUUCUUC----C
.--.............((((((.........(((((....)))))))))))................(((.((-----((((.......)))))).)))....----. ( -17.20)
>DroAna_CAF1 25676 93 - 1
CAAAACUUCUUGAAAAACGCAUAAAAAAUCAAUGGCAGAAGCCAUGUGCGCAAUAAAUGUCAGCUACAAACGA-----AAACUUCACAUGCUUUUUUU----------
...........((((((.((((.........(((((....)))))(((((((.....)))..)).))......-----.........)))).))))))---------- ( -13.90)
>DroPer_CAF1 44764 99 - 1
G-AAGCACCACCAAAAGCGCAUAAAAAACCAAUGGCUGGAGCCAUGUGCGCAAUAAAUGUCAGCUUCAAACGAGAGCGAAACUUCGUACGAUUUUUUUUU--------
(-((((..((......((((((.........(((((....)))))))))))......))...)))))..(((((........))))).............-------- ( -22.80)
>consensus
G__AACUUCUUCAAAAGCGCAUAAAAAAUCAAUGGCAAGAGCCAUGUGCGCAAUAAAUGUCAGCUACAAACGA_____AAACUUCACAUGUUUUUCUUUC________
................((((((.........(((((....)))))))))))......................................................... (-13.68 = -13.85 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:20 2006