Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,922,259 – 10,922,371 |
Length | 112 |
Max. P | 0.535410 |
Location | 10,922,259 – 10,922,371 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.47 |
Mean single sequence MFE | -25.42 |
Consensus MFE | -16.55 |
Energy contribution | -17.72 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.65 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10922259 112 + 22407834 UGUGUAUUACAAACAGGCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAA-AGCGUGUAGAAAAAUAGACAAACCGAACUUUCCGGAGAUGCG-GC---- (((.((((....(((.((.((((.((((((((....)))))))).))))...((((((....))))))-.)).))).....)))).)))..(((..(((....)))...))-).---- ( -26.60) >DroPse_CAF1 36256 110 + 1 UGUGCAUUACA-ACAGCAGGCAUAUGAAUUUAGUAUUGAAUUUAAAUUCAAAUUGCGUUUGCAUGCAA-AGCGUGUAGAAAAAUAGACACGGCGCCCCGUAAGCCGAUGGU-G----- ..(((......-...))).(((..(((((((((........)))))))))...))).(((((((((..-.)))))))))........((((((.........)))).))..-.----- ( -26.70) >DroEre_CAF1 15643 116 + 1 UGUGUAUAACAAACAGGCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAA-AGCGUGUAGAAAAAUAGACAAACCGAACUUUCCACUGACGGG-GGCGUU (((.(((.....(((.((.((((.((((((((....)))))))).))))...((((((....))))))-.)).)))......))).))).....((((..((......)).-.).))) ( -25.90) >DroWil_CAF1 4865 97 + 1 UGUGUAUUAC----AGCCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAAAAACGUGUAGAAAAAUAGACAAGCCAAGU-GUCG---------------- (((.((((..----.....((((.((((((((....)))))))).))))........((((((((......))))))))..)))).)))........-....---------------- ( -19.20) >DroAna_CAF1 16076 109 + 1 UGUGUAUUACA-ACAGCCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAA-AACGUGUAGAAAAAUAGACAAGCCGUA------GGGGUUGU-UGCAGAA .........((-((((((.((((.((((((((....)))))))).))))...(((((((((((((...-..)))))))).............))))------).))))))-))..... ( -27.41) >DroPer_CAF1 37183 110 + 1 UGUGCAUUACA-ACAGCAGGCAUAUGAAUUUAGUAUUGAAUUUAAAUUCAAAUUGCGUUUGCAUGCAA-AGCGUGUAGAAAAAUAGACACGGCGCCCCGUAAGCCGAUGGU-G----- ..(((......-...))).(((..(((((((((........)))))))))...))).(((((((((..-.)))))))))........((((((.........)))).))..-.----- ( -26.70) >consensus UGUGUAUUACA_ACAGCCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAA_AGCGUGUAGAAAAAUAGACAAGCCGAAC_GUCAGCCGAUGG__G_____ (((.((((...........((((.((((((((....)))))))).))))........(((((((((....)))))))))..)))).)))............................. (-16.55 = -17.72 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:19 2006