Locus 3757

Sequence ID 2L_DroMel_CAF1
Location 10,913,928 – 10,914,030
Length 102
Max. P 0.613846
window5915

overview

Window 5

Location 10,913,928 – 10,914,030
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.49
Mean single sequence MFE -22.92
Consensus MFE -13.92
Energy contribution -14.03
Covariance contribution 0.12
Combinations/Pair 1.29
Mean z-score -1.72
Structure conservation index 0.61
SVM decision value 0.16
SVM RNA-class probability 0.613846
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10913928 102 + 22407834
GGCGAUAUAAGUACGUAAAUAG------------------GUAUAUUUAUGUGUUUGCCCAAACAUGAAUGCUGACUGACCCAGCCACAGAAAAUGGGUAAACAGAUGUAAAAAACAGAC
.(((........(((((((((.------------------...)))))))))(((((((((....((...((((.......))))..)).....)))))))))...)))........... ( -24.60)
>DroSec_CAF1 6763 102 + 1
GGCGAUAUAAGUACGUAAAUAG------------------GUAUAUUUAUGUGUUUGUCCAAACAUGAAUGCUGACUGACCCAGCCACACCAAAUGGGUAAACAGAUGUAAAAAACAGAC
.(((........(((((((((.------------------...)))))))))((((..(((.........((((.......)))).........)))..))))...)))........... ( -19.57)
>DroSim_CAF1 7011 102 + 1
GGCGAUAUAAGUACGUAAAUAG------------------GUAUAUUUAUGUGUUUGCCCAAACAUGAAUGCUGACUGACCCAGCCACACCAAAUGGGUAAACAGAUGUAAAAAACAGAC
.(((........(((((((((.------------------...)))))))))(((((((((.........((((.......)))).........)))))))))...)))........... ( -24.17)
>DroEre_CAF1 7414 102 + 1
GGCGAUAUAAGUACGUAAAUAG------------------GUGUAUUUAUGUAUUUGCCCAAACAUCAAUGCUGACUGACCCAGCCACACCAAAUGGGUAAACAAGAGUAAAAAACAGAC
.((.(((((((((((.......------------------.))))))))))).((((((((.........((((.......)))).........)))))))).....))........... ( -22.07)
>DroYak_CAF1 7115 102 + 1
GGCGAUAUAAGUACGUAAAUAG------------------GUGUAUUUAUGUAUUUGCCCAAACAUGAAUGCUGACUGACCCAGCCGCACCGAAUGGGUAAACAGGGGUAAAAAACAGUC
(((.(((((((((((.......------------------.))))))))))).(((((((...((....))(((....(((((..((...))..)))))...)))))))))).....))) ( -27.00)
>DroAna_CAF1 7298 118 + 1
CGGAAAAUAAGUACAUUUAUAGUAUAUAUUCUCUACCCAUAUAAAUUUAUGUAUUUCCACAUACAUGGAUGCUGG--GGACAGGACAUAAUAAAUAGGUAAACAAAAAUAGAAAACAUCA
.(((.((((.((((.......)))).)))).)))(((.......((((((((((......)))))))))).(((.--...))).............)))..................... ( -20.10)
>consensus
GGCGAUAUAAGUACGUAAAUAG__________________GUAUAUUUAUGUAUUUGCCCAAACAUGAAUGCUGACUGACCCAGCCACACCAAAUGGGUAAACAGAUGUAAAAAACAGAC
(((((.....(((((((((((......................))))))))))))))))............(((....(((((...........)))))...)))............... (-13.92 = -14.03 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:18 2006