Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,907,046 – 10,907,141 |
Length | 95 |
Max. P | 0.999284 |
Location | 10,907,046 – 10,907,141 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 55.66 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -16.83 |
Energy contribution | -18.07 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.30 |
Mean z-score | -1.96 |
Structure conservation index | 0.57 |
SVM decision value | 3.48 |
SVM RNA-class probability | 0.999284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10907046 95 + 22407834 AUUCAUUAAUAUGAAUAUA-CAAAUU---------UUGACUCACCGCGGUUACCAUGGUGGGCAAUGCCAACUUGGCCACGGUGGUGGCCGGCGACAGCGUGGUC ((((((....))))))...-......---------..(((.(((..((((((((((.((((.(((.......))).)))).))))))))))((....)))))))) ( -37.90) >DroVir_CAF1 49690 100 + 1 GUUCAUUUAAAUAAUUAAACUUAAUU-----CUAAAUUACCCACCAAAGGGACCAAAGAGCCUAAGACAAUGUUCGCCACAAAUGUGGCCGGCGCAAUGCUGGUG ..........................-----........(((......)))((((....(((...((......))(((((....))))).)))((...)))))). ( -20.40) >DroYak_CAF1 226 96 + 1 --AGACUAA------GAUA-UUAGUUUUUUUUUAAGUAACUCACCCCCUUUAUCAUGGUGGGCAGAGUCAGCUUGGCCACGGUGGUGGCCGGGGACAAAGUGGUC --(((((((------....-)))))))...........((((.(((((........)).)))..))))...(((((((((....)))))))))(((......))) ( -30.20) >consensus _UUCAUUAA_AU_A_UAUA_UUAAUU______UAAAUAACUCACCACAGUUACCAUGGUGGGCAAAGCCAACUUGGCCACGGUGGUGGCCGGCGACAAAGUGGUC ..........................................(((((((((((....))))))........(((((((((....)))))))))......))))). (-16.83 = -18.07 + 1.23)
Location | 10,907,046 – 10,907,141 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 55.66 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -12.32 |
Energy contribution | -13.10 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.15 |
Mean z-score | -2.11 |
Structure conservation index | 0.44 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10907046 95 - 22407834 GACCACGCUGUCGCCGGCCACCACCGUGGCCAAGUUGGCAUUGCCCACCAUGGUAACCGCGGUGAGUCAA---------AAUUUG-UAUAUUCAUAUUAAUGAAU ((((((((.((..((((((((....))))))..((.(((...))).))...))..)).)).))).)))..---------......-...((((((....)))))) ( -32.70) >DroVir_CAF1 49690 100 - 1 CACCAGCAUUGCGCCGGCCACAUUUGUGGCGAACAUUGUCUUAGGCUCUUUGGUCCCUUUGGUGGGUAAUUUAG-----AAUUAAGUUUAAUUAUUUAAAUGAAC ((((((((..(.(((.(((((....)))))((......))...))).)..))......))))))..........-----......((((((....)))))).... ( -21.80) >DroYak_CAF1 226 96 - 1 GACCACUUUGUCCCCGGCCACCACCGUGGCCAAGCUGACUCUGCCCACCAUGAUAAAGGGGGUGAGUUACUUAAAAAAAAACUAA-UAUC------UUAGUCU-- (((............((((((....))))))(((.((((((.((((.((........))))))))))))))).............-....------...))).-- ( -30.10) >consensus GACCACCAUGUCGCCGGCCACCACCGUGGCCAAGAUGGCAUUGCCCACCAUGGUAACCGCGGUGAGUAAAUUA______AAUUAA_UAUA_U_AU_UUAAUGAA_ ..........(((((((((((....))))))..((.......))................)))))........................................ (-12.32 = -13.10 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:17 2006