Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,906,014 – 10,906,112 |
Length | 98 |
Max. P | 0.610904 |
Location | 10,906,014 – 10,906,112 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 85.87 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -18.28 |
Energy contribution | -18.37 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.08 |
Mean z-score | -2.24 |
Structure conservation index | 0.77 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10906014 98 - 22407834 UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCAGGCGCAUCUACAUACGCAU--------- .......((((...((((...((.((((.(((....))).)))).))..........(((((......)))))))))..))))...............--------- ( -23.40) >DroSec_CAF1 47790 98 - 1 UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCAGGCGCAUCUACAUACAUAU--------- .......((((...((((...((.((((.(((....))).)))).))..........(((((......)))))))))..))))...............--------- ( -23.40) >DroSim_CAF1 47162 98 - 1 UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCAGGCGCAUCUACAUACAUAU--------- .......((((...((((...((.((((.(((....))).)))).))..........(((((......)))))))))..))))...............--------- ( -23.40) >DroEre_CAF1 46030 98 - 1 UUCACAGCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCGUGCGCAUCUACAUACACAU--------- ......((((.(..((((...((.((((.(((....))).)))).))..........(((((......)))))))))..)))))..............--------- ( -26.10) >DroYak_CAF1 47001 106 - 1 UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACC-UGCGCAUCUGCAUACAUAUGUAUGUACC ........((.(((((((...((.((((.(((....))).)))).))..........(((((......)))))))).)-)))))...(((((((....))))))).. ( -29.20) >DroAna_CAF1 50361 86 - 1 UUCACAUAGCUCUAAUCCAAACAUUGCCCACACAAGUGUCGGAACUAAAUUAUUCAUUUGUUAAUUUAGACAUGGAAAACGGGCGU--------------------- ........((((...((((.......((.(((....))).))..((((((((.........))))))))...))))....))))..--------------------- ( -17.80) >consensus UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCAGGCGCAUCUACAUACAUAU_________ ........((.((.((((......((((.(((....))).))))(((((((((......))).))))))....))))...))))....................... (-18.28 = -18.37 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:15 2006