Locus 3754

Sequence ID 2L_DroMel_CAF1
Location 10,905,391 – 10,905,500
Length 109
Max. P 0.841758
window5911

overview

Window 1

Location 10,905,391 – 10,905,500
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.93
Mean single sequence MFE -25.15
Consensus MFE -15.23
Energy contribution -16.12
Covariance contribution 0.89
Combinations/Pair 1.18
Mean z-score -2.12
Structure conservation index 0.61
SVM decision value 0.75
SVM RNA-class probability 0.841758
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10905391 109 - 22407834
AGCCCCAAAAAGGGAGACGCACAA--AUUAUGCAUAUAUAUUCAAAUAUCAUGCACGCCUUAAGCUGAUUUUCCACGCUGGCAAAUUCCGAGCUCACUGGCAUUUCCU---------UAU
..........(((((((.......--....(((((((((......)))).))))).(((...(((((((((.((.....)).)))))...))))....))).))))))---------).. ( -23.60)
>DroSec_CAF1 47173 109 - 1
AACCCCAAAAAGGGGGACGCACAA--AUUAUGCAUAUAUAUUCAAAUAUCAUGCACGCCUUAAGCUGAUUUUCCACGCUGGCAAAUUCCGAGCUCACUGGCAUUGCCU---------CAU
..((((.....))))((.(((...--....(((((((((......)))).))))).(((...(((((((((.((.....)).)))))...))))....)))..))).)---------).. ( -28.80)
>DroSim_CAF1 46545 109 - 1
AACCCCAAAAAGGGGGACUCACAA--AUUAUGCAUAUAUAUUCAAAUAUCAUGCACGCCUUAAGCUGAUUUUCCACGCUGGCAAAUUCCGAGCUCACUGGCAUUUCCU---------CAU
..((((.....)))).........--....(((((((((......)))).))))).(((...(((((((((.((.....)).)))))...))))....))).......---------... ( -24.70)
>DroWil_CAF1 64859 112 - 1
------AAAAAAGAAAAAGGAAAAUUAUUAUGUAUAUAUAUUCAAAUGGCAUGCACGCCUAAAGCUGAUUUUCCACGCUGGGAAACGCUUAGCUU--UGGAAUUUACCACCCAACUCCAC
------............((.(((((....(((((.(((......)))..)))))...((((((((((((((((.....))))))...)))))))--)))))))).))............ ( -22.10)
>DroYak_CAF1 46383 107 - 1
AACCC--AAAAGGGGGACGCACAA--AUUAUGCAUAUAUAUUCAAAUAUCAUGCACGCCUUAAGCUGAUUUUCCACGCUGGAAAAUUCCGAGCUCACUGGCAUUUCCU---------CAU
.....--....((((((.......--....(((((((((......)))).))))).(((...((((((((((((.....))))))))...))))....)))..)))))---------).. ( -28.70)
>DroAna_CAF1 49850 108 - 1
AAUUGUACU-ACGGGUAAGGUAAA--UGUAUGUAUAUAUAUUCAAAUAUCAUGCACGCCUUAAGCUGAUUUUCCACGCUGGUGAACGUCAAGCCUCCAGGCAUUUCCU---------CAU
..(((.((.-.(((.((((((...--((((((.((((........)))))))))).))))))..)))......(((....)))...)))))(((....))).......---------... ( -23.00)
>consensus
AACCCCAAAAAGGGGGACGCACAA__AUUAUGCAUAUAUAUUCAAAUAUCAUGCACGCCUUAAGCUGAUUUUCCACGCUGGCAAAUUCCGAGCUCACUGGCAUUUCCU_________CAU
............(((((.............(((((((((......)))).))))).(((...(((((((((.((.....)).)))))...))))....))).)))))............. (-15.23 = -16.12 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:14 2006