Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,899,442 – 10,899,543 |
Length | 101 |
Max. P | 0.822066 |
Location | 10,899,442 – 10,899,543 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 62.54 |
Mean single sequence MFE | -22.25 |
Consensus MFE | -11.08 |
Energy contribution | -12.65 |
Covariance contribution | 1.57 |
Combinations/Pair | 1.28 |
Mean z-score | -1.64 |
Structure conservation index | 0.50 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.822066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10899442 101 + 22407834 ACACACAGGACAGUGCUCACUUUGGGCCAACACACACA---------CA-----CACAUUCACAUACAGGUGAGCCUUUAGUGACGCUGUUUUAAUUAAACCAGCUUCAGUAUUU ......(((((((((.(((((..((((...........---------..-----.....((((......))))))))..))))))))))))))...................... ( -24.76) >DroSec_CAF1 39058 108 + 1 ACUCACAGGACAGUGCUCACUUUGGGCCAACACA--CACACCACACUCA-----CACGUACACAUACACGUGAGCCUUUAGUGGCGCUGUUUUAAUUAAACCAGAUUCUGUAUUC ....((((((((((((.((((..((((.......--.............-----(((((........))))).))))..))))))))))))..((((......)))))))).... ( -27.80) >DroAna_CAF1 42695 104 + 1 -CUCACGUCGCAGUGUUCACUUUAC--UAA-ACUC---UACUUUAGUCGCAUGCCACACGGAUACAC----CUGCAUUUUGUUGCACCGUUUUAAUUAAAGAAGUUCUGUUAUUU -.....((.((((((........((--(((-(...---...))))))))).))).))(((((.((..----.((((......))))...((((......)))))))))))..... ( -14.20) >consensus ACUCACAGGACAGUGCUCACUUUGGGCCAACACAC_CA_AC___A_UCA_____CACAUACACAUACA_GUGAGCCUUUAGUGGCGCUGUUUUAAUUAAACCAGAUUCAGUAUUU ......(((((((((.(((((..((((..............................................))))..))))))))))))))...................... (-11.08 = -12.65 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:11 2006