Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,893,657 – 10,893,771 |
Length | 114 |
Max. P | 0.959689 |
Location | 10,893,657 – 10,893,771 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 66.09 |
Mean single sequence MFE | -20.43 |
Consensus MFE | -13.87 |
Energy contribution | -16.10 |
Covariance contribution | 2.23 |
Combinations/Pair | 1.10 |
Mean z-score | -1.26 |
Structure conservation index | 0.68 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10893657 114 + 22407834 ----AGAAAGCUAAAAACAAAAAUAUACCAAGAGAUAUAAGAUCAAAGGUGUGUAAAAGUAUGAAACUAAUUCACUUGAAUCGUUUAU-UUUUCGUAGCUUACUAUUAGAUACAUUUAU- ----((.((((((.........(((((((....(((.....)))...)))))))(((((((...(((..((((....)))).))))))-))))..)))))).))...............- ( -15.50) >DroEre_CAF1 33453 109 + 1 AACUCCUAAGCUAAA-----ACUAAAAC--CGGGAUA-AAGGUCAAAGGUGUGUAAAAGUGUUCUACA---CUAAUGGAUUCGCUUAUUUUUUCAUAGCAUACUUCUAGACACCUUUAUC ...............-----......((--(......-..))).((((((((.((.((((((((((..---....))))...(((...........))))))))).)).))))))))... ( -21.30) >DroYak_CAF1 34228 105 + 1 ----AGUAGGCUAAAU----AAUAAAAC--AGAGGUG-CAGCACAAAGGUGUGUAAAAGUAGGCUACAAUUCUAAUAGACUCGCUUUUACUUUCGUAGCAUACUUUUAAACACCUU---- ----.....(((..((----........--....)).-.)))...(((((((.((((((((.(((((.....(((.((.....)).))).....))))).)))))))).)))))))---- ( -24.50) >consensus ____AGUAAGCUAAA_____AAUAAAAC__AGAGAUA_AAGAUCAAAGGUGUGUAAAAGUAUGCUACAA_UCUAAUAGAAUCGCUUAU_UUUUCGUAGCAUACUUUUAGACACCUUUAU_ ............................................((((((((.((((((((.(((((...........................))))).)))))))).))))))))... (-13.87 = -16.10 + 2.23)
Location | 10,893,657 – 10,893,771 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 66.09 |
Mean single sequence MFE | -21.86 |
Consensus MFE | -13.20 |
Energy contribution | -15.76 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.35 |
Structure conservation index | 0.60 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879203 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10893657 114 - 22407834 -AUAAAUGUAUCUAAUAGUAAGCUACGAAAA-AUAAACGAUUCAAGUGAAUUAGUUUCAUACUUUUACACACCUUUGAUCUUAUAUCUCUUGGUAUAUUUUUGUUUUUAGCUUUCU---- -...............((.((((((...(((-(((((.(((.((((((.(..(((.....)))..).)))....)))))).((((((....))))))..)))))))))))))).))---- ( -16.50) >DroEre_CAF1 33453 109 - 1 GAUAAAGGUGUCUAGAAGUAUGCUAUGAAAAAAUAAGCGAAUCCAUUAG---UGUAGAACACUUUUACACACCUUUGACCUU-UAUCCCG--GUUUUAGU-----UUUAGCUUAGGAGUU ..(((((((((.(((((((.((((((......)).)))).........(---(.....))))))))).))))))))).....-..(((.(--(((.....-----...))))..)))... ( -23.30) >DroYak_CAF1 34228 105 - 1 ----AAGGUGUUUAAAAGUAUGCUACGAAAGUAAAAGCGAGUCUAUUAGAAUUGUAGCCUACUUUUACACACCUUUGUGCUG-CACCUCU--GUUUUAUU----AUUUAGCCUACU---- ----(((((((.((((((((.(((((....)))...((((.((.....)).)))).)).)))))))).)))))))...((((-.......--........----...)))).....---- ( -25.77) >consensus _AUAAAGGUGUCUAAAAGUAUGCUACGAAAA_AUAAGCGAAUCAAUUAGA_UUGUAGCAUACUUUUACACACCUUUGACCUU_UAUCUCU__GUUUUAUU_____UUUAGCUUACU____ ..(((((((((.((((((((.(((((...........................))))).)))))))).)))))))))........................................... (-13.20 = -15.76 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:02 2006