Locus 3743

Sequence ID 2L_DroMel_CAF1
Location 10,890,759 – 10,890,861
Length 102
Max. P 0.966835
window5893

overview

Window 3

Location 10,890,759 – 10,890,861
Length 102
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 85.33
Mean single sequence MFE -24.13
Consensus MFE -17.25
Energy contribution -17.50
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.73
Structure conservation index 0.72
SVM decision value 1.60
SVM RNA-class probability 0.966835
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10890759 102 - 22407834
CCGCAGGUAAACCACAAGAAUACCAACCACCCAACCUCCCACCCACC--------------AGACCCCCUAACACGUGGUCGGUCUCCUUGUGAGCGCACGUGUGUACAUUUUUAA
.((((.((...(((((((...(((.(((((.................--------------..............))))).)))...)))))).)...)).))))........... ( -20.98)
>DroSec_CAF1 30330 93 - 1
CCGCAGGUAAACCACAAGGAUACCACCCACCCA-----CCACCCACC--------------AGCCACCCUAACACGUGG----UCUCCUUGUGAGCGCACGUGUGCACAUUUUUAA
............((((((((.(((((.......-----.........--------------..............))))----).)))))))).((((....)))).......... ( -23.21)
>DroSim_CAF1 30735 93 - 1
CCGCAGGUAAGCCACAAGGAUACCACCCACCCA-----CCACCCACC--------------AGCCACCCUAACACGUGG----UCUCCUUGUGAGCGCACGUGUGUACAUUUUUAA
.((((.((..((((((((((.(((((.......-----.........--------------..............))))----).)))))))).))..)).))))........... ( -28.41)
>DroYak_CAF1 31249 107 - 1
CCGCAGGUAAACCACAAGGAUACCAACCACCCA-----CCACCUACCACCCAUCAUCCUGUAGCCCCCCUAACACGUGG----UCUCCUUGUGAGCGCACGUGUGUACAUUUUUAA
.((((.((...(((((((((.((((........-----....((((.............)))).............)))----).)))))))).)...)).))))........... ( -23.93)
>consensus
CCGCAGGUAAACCACAAGGAUACCAACCACCCA_____CCACCCACC______________AGCCACCCUAACACGUGG____UCUCCUUGUGAGCGCACGUGUGUACAUUUUUAA
.((((.((...(((((((((......((((.............................................))))......)))))))).)...)).))))........... (-17.25 = -17.50 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:56 2006