| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,888,379 – 10,888,496 |
| Length | 117 |
| Max. P | 0.608959 |
| Location | 10,888,379 – 10,888,496 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.59 |
| Mean single sequence MFE | -37.93 |
| Consensus MFE | -18.58 |
| Energy contribution | -19.08 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10888379 117 - 22407834 AUCAACAAGCUGGCUGCCACGUACGAGCGCCUUAUUUACCUGGAUGCGGACAUCAGGAAGCUGAAGGGAGUCAUUGAAAAGGCCAUCACAGUGGCUAAUGAGGAAUCGGCAG---CAGCC ........((((.(((((.(((....)))(((((((....(.(((((...(.((((....)))).)...).)))).)...((((((....)))))))))))))....)))))---)))). ( -38.70) >DroSec_CAF1 27960 117 - 1 AUCAACAAGCUGGCUGCCACGUACGAGCGACUUAUUUACCUGGAUGCGGACAUCAGGAAGCUGAAGGGAGUCAUUGAAAAGGCCAUCACGGUGGCUAAUGAGGAAUCGGCAG---CAGCC ........((((.(((((.....(((..(((((.((((((((.(((....)))))))....))))..))))).)))....((((((....))))))...........)))))---)))). ( -38.30) >DroEre_CAF1 28185 117 - 1 GUCAACAAGCUGGCUGCCAAGUACGAGCGCCUUAUUUACCUGGAUGAGGACAUCAGAAAGCUGAAGGGAGCCAUUGAGAAGGCCAUCACAGUGGCUAACAACGAGUCGGCAG---CCGCC ........((.(((((((............(((((((....)))))))(((.((((....)))).(..((((((((.((......)).))))))))..).....))))))))---)))). ( -43.00) >DroYak_CAF1 28872 117 - 1 CUAAAAAAGCUGGCUGCCAAGUACCAGCACCUUAUUUACCUGGAUGCGGACAUCAGAAAGCUGAAGGGAACCAUUGAGAAGGCCAUCACUGUGGCCAAUGAGGAAUCGGCAG---CCGCC ........((.(((((((..((....)).(((((((...((.((((.(..(.((((....))))...)..))))).))..((((((....)))))))))))))....)))))---)))). ( -42.10) >DroAna_CAF1 30044 120 - 1 AUCAACAAGCUGACAUCUAGAUACGAGCGUAUUUUGUACCUGGAUGCCGAUAUUAGGAAAUUGAAACAGACAAUAGAGAAAGAAAUAGCGGCGGCGAAUCAAGAAUCGGCGGCUGCAGCG ........(((..(((((((.((((((.....)))))).)))))))((.......))..............................(((((.((((........)).)).)))))))). ( -28.50) >DroPer_CAF1 31466 117 - 1 GUCGAUAAGUUGGCUGCUAAAUAUGAGCGUAUUGUGUACCUCGAUAACGACCUAAGGAAGCUUAAGGAAUCUAUCGAGAAGGGUGUUGCUGCGGCCAAUGCGCAGUUGACAU---CAGCG ((((((..(((((((((..(((((....((((...))))(((((((....((((((....))).)))....)))))))....)))))...))))))))).....))))))..---..... ( -37.00) >consensus AUCAACAAGCUGGCUGCCAAGUACGAGCGCCUUAUUUACCUGGAUGCGGACAUCAGGAAGCUGAAGGGAGCCAUUGAGAAGGCCAUCACAGUGGCUAAUGAGGAAUCGGCAG___CAGCC ........((((.(((((.....................((.((((....(.((((....)))).).....)))).))..((((((....))))))...........)))))...)))). (-18.58 = -19.08 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:53 2006