Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,885,471 – 10,885,565 |
Length | 94 |
Max. P | 0.713390 |
Location | 10,885,471 – 10,885,565 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.29 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -6.68 |
Energy contribution | -7.52 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.22 |
Mean z-score | -1.95 |
Structure conservation index | 0.27 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10885471 94 - 22407834 CAAAUUGUCUCCAAAGGACAAUUAAUAGCAGACCCCUAUUCACUUUCAAACUUCAUU--------------------------GAAACCAUCUUUGGUUGCCGGUGGAAAGGCAAUUUGU ..((((((((.....))))))))....(((((..(((.((((((.((((......))--------------------------))(((((....)))))...)))))).)))...))))) ( -23.60) >DroSec_CAF1 25229 93 - 1 CAAAUUGUCUCCAAA-AACAAUUAAUAGCAGACCCCUAUUCACUUUCGACCUUCAUU--------------------------GAAACCAUCUUUGGUUGCCGGUUGAAGAGCAAUUUGU (((((((.(((....-.......(((((.......)))))....(((((((......--------------------------..(((((....)))))...))))))))))))))))). ( -20.40) >DroSim_CAF1 25588 94 - 1 CAAAUGGUAUCCAAAGAACAAUUAAUAGCAGACCCCUAUUCACUUUCGACCUUCAUU--------------------------GAAACCAUCUUUGGUUGCCGGUUGAAGAGCAAUUUGU (((.(((((.(((((((......(((((.......)))))...((((((......))--------------------------))))...))))))).))))).)))............. ( -19.00) >DroEre_CAF1 25583 82 - 1 CAAAUUGUCUCUACAGGACAUUCAAUUGACAGCCCCUGGAAAAU-------------------------------------CUC-GGCCACGUUUGGUGGCCGAGUGAACAGCAAUUUGU ((((((((.....((((....((....)).....))))......-------------------------------------(((-((((((.....)))))))))......)))))))). ( -28.60) >DroYak_CAF1 26027 120 - 1 CGAAUUGUCCCUAAAGCACAAUUAAUAGCAGACCCCUAUUCGAUUACGACCUUCAUUUGUGGCCUCCGGGCCAUGGAAAAUCUCAGGCCACGUUUGGGUGCCGGGUGAAAACCAAUUUGU ((((((((((((...(((((((((((((.......))))).)))).......(((..(((((((((((.....))))........)))))))..))))))).))).))....))))))). ( -30.50) >consensus CAAAUUGUCUCCAAAGAACAAUUAAUAGCAGACCCCUAUUCACUUUCGACCUUCAUU__________________________GAAACCAUCUUUGGUUGCCGGUUGAAAAGCAAUUUGU ((((((((...............(((((.......))))).............................................(((((....)))))............)))))))). ( -6.68 = -7.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:49 2006