Locus 3737

Sequence ID 2L_DroMel_CAF1
Location 10,884,755 – 10,884,855
Length 100
Max. P 0.950993
window5886

overview

Window 6

Location 10,884,755 – 10,884,855
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.52
Mean single sequence MFE -30.02
Consensus MFE -16.35
Energy contribution -17.35
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.54
SVM decision value 1.41
SVM RNA-class probability 0.950993
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10884755 100 + 22407834
UUACCACUCCACG-AGCAUUUU--GGG-CAGCCAUUUAGUGACAAAUUAAGUGCC----------------GUCGUAUGCGUGUUAAUUUCGCAACUCUUAGCAAAUGACGCAUACGACA
...((((((...)-)).....)--)).-..(.((((((((.....)))))))).)----------------(((((((((((....((((.((........)))))).))))))))))). ( -27.70)
>DroPse_CAF1 26127 101 + 1
-UGCCGCUCCCCCGUCGGCAUU--AGGCAACCCAUUUAGUGACAAAUUAAGUGUC----------------GUCGUAUGCGUGUUAAUUUCGCAACUCCACUGAAAUGACGCAUACGCCA
-((((((......).)))))..--.(((....((((((((.....))))))))..----------------...((((((((....((((((.........)))))).))))))))))). ( -31.50)
>DroEre_CAF1 24884 100 + 1
UCAGCACUCCAGC-AACAUUUU--GGG-UAGCCAUUUAGUGACAAAUAAAGUGGC----------------GUCGUAUGCGUGUUAAUUUCGCAACUCUUAGCAAAUGACGCAUACGACA
.....((.((((.-......))--)))-).(((((((.((.....)).)))))))----------------(((((((((((....((((.((........)))))).))))))))))). ( -32.20)
>DroYak_CAF1 25217 100 + 1
CUACCACUCCACC-AGCAUUUU--GGG-CAGCCAUUUAGUGACAAAUAAAGUGCC----------------GCCGUAUGCGUGUUAAUUUCGCAACUCUUAGCAAAUGACGCAUACGACA
.............-.(((((((--(.(-..((......))..)...)))))))).----------------(.(((((((((....((((.((........)))))).))))))))).). ( -23.00)
>DroAna_CAF1 26783 110 + 1
GUGCCAC----------AUCUCCGGGGCAAGCCAUUUAGUGAAAAAUUAAGUGCCCGACGUCGUCGUCCUUGUCGUAUGCGUGUUAAUUUCGCAACUCUUAGCAAAUGACGCAUACGACA
.((((.(----------......).))))...((((((((.....))))))))...((((....))))..((((((((((((....((((.((........)))))).)))))))))))) ( -34.20)
>DroPer_CAF1 26362 101 + 1
-UGCCGCUCCCCCGUCGGCAUU--AGGCAACCCAUUUAGUGACAAAUUAAGUGUC----------------GUCGUAUGCGUGUUAAUUUCGCAACUCCACUGAAAUGACGCAUACGCCA
-((((((......).)))))..--.(((....((((((((.....))))))))..----------------...((((((((....((((((.........)))))).))))))))))). ( -31.50)
>consensus
_UACCACUCCACC_ACCAUUUU__GGG_AAGCCAUUUAGUGACAAAUUAAGUGCC________________GUCGUAUGCGUGUUAAUUUCGCAACUCUUAGCAAAUGACGCAUACGACA
................................((((((((.....))))))))..................(.(((((((((....((((.((........)))))).))))))))).). (-16.35 = -17.35 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:48 2006