Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,884,477 – 10,884,576 |
Length | 99 |
Max. P | 0.679826 |
Location | 10,884,477 – 10,884,576 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -25.47 |
Consensus MFE | -17.79 |
Energy contribution | -18.07 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.39 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10884477 99 + 22407834 UUGGGUUGCGUGCUCGCUUGUUUCGCUU-UUUGUAAUUUUCAAUUUAAGCAGCACAACGUGUUGCUCGC-CAAC----------------UUGCCACAUUGCCACACGGCUACACUA ..((((((((.((.(((((((...((((-.(((.......)))...))))...)))).)))..)).)).-))))----------------))........(((....)))....... ( -23.50) >DroSec_CAF1 24229 100 + 1 UUGGGUUGCGUGCUCGCUUGUUUCGCUU-UUUGUAAUUUUCAAUUUAAGCAGCACAACGUGUUGCUCACCCAAC----------------UUGCCACAUUGCCACAUGGCUACACUU ((((((.(((.((......))..)))..-..................((((((((...)))))))).)))))).----------------..........(((....)))....... ( -24.50) >DroSim_CAF1 24591 100 + 1 UUGGGUUGCGUGCUCGCUUGUUUCGCUU-UUUGUAAUUUUCAAUUUAAGCAGCACAACGUGUUGCUCACCCAAC----------------UUGCCACAUUGCCACAUGGCUACACUU ((((((.(((.((......))..)))..-..................((((((((...)))))))).)))))).----------------..........(((....)))....... ( -24.50) >DroEre_CAF1 24596 112 + 1 UUGGGUUGCGUGCUGGCUUGUUUCGCUU-UUUGUAAUUUUCAAUUUGAGCAACACAACGUGUUGCUCGC-CAAU--G-CUGCUUGCCACAUUGCCACAUUGCCACACGGCUACACUA .(((((.((((..((((.......((..-...))............(((((((((...)))))))))))-))..--)-).))..))).))..........(((....)))....... ( -31.40) >DroYak_CAF1 24923 115 + 1 UUGGGUUGCGUGCCAGCUUGUUUCGCUU-UUUGUAAUUUUCAAUUUAAGCAGCACAACGUGUUGCUCGC-CAACUUGCCUCUUUGCCACAUUGCCACAUGGCCACAUGGCUACACUA ..((((((((.((..((((((...((((-.(((.......)))...))))...)))).))...)).)).-))))))........((((....(((....)))....))))....... ( -27.50) >DroAna_CAF1 26655 92 + 1 CAUCGUUGCGUGCUGGUUUGUUUCGCUUUUUUGUAAUUUUCAAUUUAAGCUACACAACGUGUUGC-------------------------UUGCCACAUUGCCACAUGGCAACUGGU ((.(((((.(((((...(((..(..(......)..)....)))....))).)).)))))))....-------------------------..((((..(((((....))))).)))) ( -21.40) >consensus UUGGGUUGCGUGCUCGCUUGUUUCGCUU_UUUGUAAUUUUCAAUUUAAGCAGCACAACGUGUUGCUCGC_CAAC________________UUGCCACAUUGCCACAUGGCUACACUA ...(((.(((.((......))..))).....................((((((((...))))))))..........................))).....(((....)))....... (-17.79 = -18.07 + 0.28)
Location | 10,884,477 – 10,884,576 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -18.74 |
Energy contribution | -19.58 |
Covariance contribution | 0.85 |
Combinations/Pair | 1.07 |
Mean z-score | -2.12 |
Structure conservation index | 0.66 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10884477 99 - 22407834 UAGUGUAGCCGUGUGGCAAUGUGGCAA----------------GUUG-GCGAGCAACACGUUGUGCUGCUUAAAUUGAAAAUUACAAA-AAGCGAAACAAGCGAGCACGCAACCCAA ..((((.((((..(....)..))))..----------------(((.-...))).))))((((((.(((((...(((.......))).-..((.......))))))))))))).... ( -26.10) >DroSec_CAF1 24229 100 - 1 AAGUGUAGCCAUGUGGCAAUGUGGCAA----------------GUUGGGUGAGCAACACGUUGUGCUGCUUAAAUUGAAAAUUACAAA-AAGCGAAACAAGCGAGCACGCAACCCAA .......(((((((....)))))))..----------------.(((((((.....)))((((((.(((((...(((.......))).-..((.......))))))))))))))))) ( -27.30) >DroSim_CAF1 24591 100 - 1 AAGUGUAGCCAUGUGGCAAUGUGGCAA----------------GUUGGGUGAGCAACACGUUGUGCUGCUUAAAUUGAAAAUUACAAA-AAGCGAAACAAGCGAGCACGCAACCCAA .......(((((((....)))))))..----------------.(((((((.....)))((((((.(((((...(((.......))).-..((.......))))))))))))))))) ( -27.30) >DroEre_CAF1 24596 112 - 1 UAGUGUAGCCGUGUGGCAAUGUGGCAAUGUGGCAAGCAG-C--AUUG-GCGAGCAACACGUUGUGUUGCUCAAAUUGAAAAUUACAAA-AAGCGAAACAAGCCAGCACGCAACCCAA ..(.((.((.(((((((.....(.((((((.(....).)-)--))))-.)(((((((((...))))))))).................-...........)))).))))).)).).. ( -35.20) >DroYak_CAF1 24923 115 - 1 UAGUGUAGCCAUGUGGCCAUGUGGCAAUGUGGCAAAGAGGCAAGUUG-GCGAGCAACACGUUGUGCUGCUUAAAUUGAAAAUUACAAA-AAGCGAAACAAGCUGGCACGCAACCCAA ..((((.(((((((.(((....))).)))))))..........((..-(((((((.(((...))).)))))...(((.......))).-...........))..))))))....... ( -33.20) >DroAna_CAF1 26655 92 - 1 ACCAGUUGCCAUGUGGCAAUGUGGCAA-------------------------GCAACACGUUGUGUAGCUUAAAUUGAAAAUUACAAAAAAGCGAAACAAACCAGCACGCAACGAUG .....(((((((((....)))))))))-------------------------......((((((((.((((...(((.......)))..))))(........)...))))))))... ( -22.50) >consensus AAGUGUAGCCAUGUGGCAAUGUGGCAA________________GUUG_GCGAGCAACACGUUGUGCUGCUUAAAUUGAAAAUUACAAA_AAGCGAAACAAGCGAGCACGCAACCCAA ..((((.((((..(....)..))))..................(((.....))).))))((((((.((((....(((.......)))....((.......)).)))))))))).... (-18.74 = -19.58 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:47 2006