Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,874,952 – 10,875,046 |
Length | 94 |
Max. P | 0.842793 |
Location | 10,874,952 – 10,875,046 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 75.14 |
Mean single sequence MFE | -18.44 |
Consensus MFE | -12.85 |
Energy contribution | -13.60 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.16 |
Mean z-score | -1.28 |
Structure conservation index | 0.70 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10874952 94 - 22407834 CUGGCAUACA--AAAA----AAGGCAAUCAGUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGUCAUACCCCCCCCC-CAACCGCCUAUC---CC ..(((.....--....----...((((((.....))))))(((((..((((....))))..))))).(((((.............)-)))).)))....---.. ( -20.42) >DroSec_CAF1 21661 98 - 1 CUGGCAUACA--AAAA----AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGUCAUACCCCCUCCCCCCUCCCUUCACUCAGCC ..(((...((--((..----...((((((.....)))))).))))((((((..((.(((....))).)).)))))).........................))) ( -16.90) >DroSim_CAF1 22081 95 - 1 CUGGCAUACA--AAAA----AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGUCAUACCCCCGACCCCCUCCGCUCAUC---CC ..(((.....--....----...((((((.....))))))(((((..((((....))))..))))).(((((........))))).......)))....---.. ( -18.70) >DroEre_CAF1 22082 81 - 1 CUGGCAUACA--AAA-----AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGCCAUUCCCCCCUCC----------------CC .((((..((.--...-----...((((((.....))))))(((((..((((....))))..))))).))..))))...........----------------.. ( -18.30) >DroYak_CAF1 22408 82 - 1 CUGGCAUACA--CAAAAAAUAAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCCCCCAAGUAGUUGGCCAUUCCCCCCU-------------------- .((((..((.--...........((((((.....))))))(((((..((((....))))..))))).))..)))).........-------------------- ( -19.90) >DroAna_CAF1 22989 80 - 1 C----CUACGGUAAGA----AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCUACAGCGCCAGUGUACAGAGGCAGAAGUCCCUCC----------------CC .----.....(((..(----((.((((((.....)))))).)))..((((.(....).))))...))).((((........)))).----------------.. ( -16.40) >consensus CUGGCAUACA__AAAA____AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGUCAUACCCCCCUCC________________CC .((((..................((((((.....))))))(((((..((((....))))..))))).....))))............................. (-12.85 = -13.60 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:45 2006