Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,873,880 – 10,873,985 |
Length | 105 |
Max. P | 0.884229 |
Location | 10,873,880 – 10,873,985 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 79.50 |
Mean single sequence MFE | -21.75 |
Consensus MFE | -16.25 |
Energy contribution | -16.42 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.25 |
Mean z-score | -1.74 |
Structure conservation index | 0.75 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10873880 105 + 22407834 UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCAACUCACAC--ACACACACUCG ((((((.........(((((((...........)))))))...(((((((..((....)).)))))))....))))))................--........... ( -24.30) >DroPse_CAF1 22712 83 + 1 -------------AUUUGGUACAA--ACAUUAUUUGUCACAUAAUGAUCCCUCCCGAUGGCCGGCUAUAAGUGAUAAGAG-------CCCAAAC--ACACUCACGGG -------------...........--.((((((.......))))))......((((((((....)))).........(((-------.......--...))).)))) ( -11.00) >DroSec_CAF1 20621 105 + 1 UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCAACUCACAC--ACACACACACG ((((((.........(((((((...........)))))))...(((((((..((....)).)))))))....))))))................--........... ( -24.30) >DroSim_CAF1 21056 103 + 1 UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCAACUCACAC--AC--ACACACG ((((((.........(((((((...........)))))))...(((((((..((....)).)))))))....))))))................--..--....... ( -24.30) >DroEre_CAF1 21057 107 + 1 UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCGCCACACAGACACACACACUGG ((((((.........(((((((...........)))))))...(((((((..((....)).)))))))....))))))((.....))....(((.........))). ( -25.30) >DroYak_CAF1 21303 101 + 1 UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCAUAUAAUGAGCCCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUUCGACAC------ACACACACUCG ((((....))))((((((((((...........))))).....((((((...((....))..))))))......................------......))))) ( -21.30) >consensus UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCAACUCACAC__ACACACACUCG ...............(((((((...........)))))))...(((((((..((....)).)))))))....................................... (-16.25 = -16.42 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:44 2006