Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,869,467 – 10,869,573 |
Length | 106 |
Max. P | 0.886638 |
Location | 10,869,467 – 10,869,573 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 71.90 |
Mean single sequence MFE | -18.26 |
Consensus MFE | -6.93 |
Energy contribution | -7.93 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.24 |
Mean z-score | -2.15 |
Structure conservation index | 0.38 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10869467 106 - 22407834 AACUGUGUAAUUGUUAAUAAUUGGACAGCAAUACGGCAAGUAAACAAAUAAAUAUUUUUAUACCCAACCACA-------CA------UACAGCCGUAUAAAAAACAUUUGCAUAGAUAU ..((((((((.((((......((.....))(((((((..(....)..(((((....)))))...........-------..------....)))))))....)))).)))))))).... ( -20.80) >DroSec_CAF1 16234 101 - 1 AACUGUGUUAUUGUUAAUAAUUGGACAGCAACACGCCAAGUAAACAAUAAAAUAUUUUUAUACCCAAC-ACA-------CA------CACGGC----UAUAAAACAUUUGCAUAGAUAU ..(((((((((((((.....((((.(........)))))...)))))))......(((((((.((...-...-------..------...)).----))))))).....)))))).... ( -16.80) >DroSim_CAF1 16632 107 - 1 AACUGUGUAAUUGUUAAUAAUUGGACAGCAAAACGCCAAGUAAACAAUAAAAUAUUUUUAUACCCAAC-ACACACACA-CA------CACGGC----UGUAAAACAUUUGCAUAGAUAU ..(((((((((((((.....((((.(........)))))...)))))).......(((((((.((...-.........-..------...)).----)))))))....))))))).... ( -16.73) >DroEre_CAF1 16618 89 - 1 AACUGUGCGAUGGCUAC------AACUGCAACAAGCCAAUCAAACAAUGAAAUGCUUUAUGCCCA--------------CA------CACAGC----UGUAAAACAUUCGCAUAGAUGU ..((((((((((..(((------(.(((((..((((...(((.....)))...))))..)))...--------------..------...)).----))))...)).)))))))).... ( -20.30) >DroYak_CAF1 16670 95 - 1 AACUGUGUAAUUGUUAUUAAUUGGACUGCAUCAAGCCAAGCAAACAAUGAAAUAUUUGUAUACCA--------------AA------CACAGC----UGUAAAACAUUCGCAUAGAUAU ..(((((..(.((((.....((((.((......))))))....((((........))))......--------------..------......----.....)))).)..))))).... ( -15.40) >DroAna_CAF1 17690 113 - 1 AAGCAUGUAAUUGUUAAUAAUUGAGCAGCAACAAGCCGGACAAACAA-AAAAUAUUUUCAUUCCAAAA-UUGAAUAAAGCAUUUGGUGACAGA----UGUACAACAUUUGCAUAGAUAU ....((((((.((((..((((((.((........)))(((.......-.............)))..))-)))......(((((((....))))----)))..)))).))))))...... ( -19.55) >consensus AACUGUGUAAUUGUUAAUAAUUGGACAGCAACAAGCCAAGCAAACAAUAAAAUAUUUUUAUACCAAAC_ACA_______CA______CACAGC____UGUAAAACAUUUGCAUAGAUAU ..((((((((.((((............((.....))....................................................(((......)))..)))).)))))))).... ( -6.93 = -7.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:43 2006