| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,866,063 – 10,866,157 |
| Length | 94 |
| Max. P | 0.559563 |
| Location | 10,866,063 – 10,866,157 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 69.74 |
| Mean single sequence MFE | -15.83 |
| Consensus MFE | -2.33 |
| Energy contribution | -2.69 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.15 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10866063 94 - 22407834 CAUGGAAUGCGAUGGAAAACCAGUGAGUG-AUGUGUUCUGACAAAAGG-----CGAAAAAAAAAGGAAAAAAUUAAACAUGUCUGGCAAAAGCAGAACAA (((.(....((.(((....))).))..).-)))(((((((.....(((-----((........................)))))........))))))). ( -12.68) >DroSim_CAF1 13112 90 - 1 CAUGGAAUGCGAUGGAAAACCAGUGAGUG-UUGUGUUCUAACAAAAGG-----CGAA-AAA--A-GGGAAAAUUAAACAUGGCUGGCAAAGGCAGAACAA ..((...(((..(....).(((((..(((-((...((((.........-----....-...--.-.)))).....))))).))))).....)))...)). ( -14.27) >DroEre_CAF1 13026 89 - 1 CAUGGAAUGCGAUGGA-GACACGUGAGUG-UUGUGUUCUGGCAAA-GG-----CAAAGAAU--A-AAUAAAAUAAAACAUGGCAGGCAACAGCAGAACAA ....(..(((.(((..-(((((....)))-)).((((((.((...-.)-----)..)))))--)-............))).)))..)............. ( -22.00) >DroYak_CAF1 13239 90 - 1 CAUGGAAUGCGAUGGAAAACACGUGAGUG-UUGUGUUUUGACUAA-GG-----CAAAAAAA--A-GGGAAAAUAAAACAUGGCAGGCAAAAGCUGAAUAA .......(((.(((...(((((....)))-)).((((((..((..-..-----........--)-)..))))))...))).)))(((....)))...... ( -18.90) >DroAna_CAF1 13842 88 - 1 UAUCCAGUGCCUUCCAA---------UUGUAUCUAUGUUGACAAUAGGAAAAACAAAAAAU--A-AAUAAAAUAACUCUAGACUAGAGAAAAGCGAACUA .......(((.((((.(---------((((..........))))).))))...........--.-..........(((((...)))))....)))..... ( -11.30) >consensus CAUGGAAUGCGAUGGAAAACAAGUGAGUG_UUGUGUUCUGACAAAAGG_____CAAAAAAA__A_GAGAAAAUAAAACAUGGCUGGCAAAAGCAGAACAA ..((((((((((..................))))))))))............................................................ ( -2.33 = -2.69 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:40 2006