Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,864,902 – 10,864,998 |
Length | 96 |
Max. P | 0.697832 |
Location | 10,864,902 – 10,864,998 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -29.83 |
Consensus MFE | -20.14 |
Energy contribution | -21.17 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.21 |
Mean z-score | -2.06 |
Structure conservation index | 0.67 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10864902 96 - 22407834 AAGAGCUGCAAAAAAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCAGCAAUGGAAGAUUCGUGGCCGUGGUCCAAC .(((((.(((.(((.(.....).))).))).)))))...((((((........(((((.(((.(((....)))....))).))))))))))).... ( -32.50) >DroPse_CAF1 12558 87 - 1 AAAAAAUGAG-AAAAGAGAAUCAUUUAUGCCGCUUUAAAACCCGCAAACGACA-GUCGGAAAGCCAG---GGCCGGCUUUCUGGCCU--GUCCA-- ...((((((.-.........)))))).....((..........))....((((-(((((((((((..---....)))))))))).))--)))..-- ( -25.50) >DroSec_CAF1 11751 96 - 1 AAGAGCUGCAAAAAAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCAGCAGUGGAGGAUUCGUGGCCGUGGUCCAUC .(((((.(((.(((.(.....).))).))).)))))...((((((........(((((.(((.(((....)))....))).))))))))))).... ( -30.10) >DroSim_CAF1 11948 96 - 1 AAGAGCUGCAAAAAAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCAACAGUGGAGGAUUCGUGGCCGUGGUCCAUC .(((((.(((.(((.(.....).))).))).)))))...((((((........(((((.(((.(((....)))....))).))))))))))).... ( -30.20) >DroEre_CAF1 11895 87 - 1 AAGAGCUGCAAA-AAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCUGGCCAGGAAGCCA--------GGAUUCGUGGCCGUGGUCCGUG .(((((.(((.(-((........))).))).)))))...(((((((((((..((((......))))--------))))).)))))).......... ( -31.90) >DroYak_CAF1 12106 87 - 1 AAGAGCUGCAAA-AAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCG--------GGAUUCGUGGUCGUGGUCCAUG .(((((.(((.(-((........))).))).)))))...(((((((((((...(((......))).--------))))).)))))).......... ( -28.80) >consensus AAGAGCUGCAAAAAAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCAG___UGGAGGAUUCGUGGCCGUGGUCCAUC .(((((.(((.(((.(.....).))).))).)))))...((((((........(((((.(((.((.........)).))).))))))))))).... (-20.14 = -21.17 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:39 2006