Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,163,551 – 1,163,653 |
Length | 102 |
Max. P | 0.564259 |
Location | 1,163,551 – 1,163,653 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 77.52 |
Mean single sequence MFE | -22.94 |
Consensus MFE | -15.82 |
Energy contribution | -16.30 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.31 |
Mean z-score | -1.41 |
Structure conservation index | 0.69 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1163551 102 - 22407834 CGCGAAUAUGUCCAACCUACAGC--AGAAAUCUCCGGGGAAAUUGCGAUGGCA----------ACUGGUCUUAUUGUAAUUUCGAUUCGCCCUCGCGAAUUUCACUCGCUU-AUU .((((..........(((..((.--(....)))..)))((((((((((((((.----------....)))..)))))))))))(((((((....)))))))....))))..-... ( -26.10) >DroSec_CAF1 57114 102 - 1 CGCGAAUAUGUUUAACGUACAGC-----AAUCUCCGGGGAAAUUGCGAUGGCUACU-------ACUGGUCUUAUUGUAAUUUCGAUUCGCCCUCGCGAAUUUCACUCGCUC-AUU .((...((((.....))))..))-----......((((((((((((((((((((..-------..)))))..)))))))))))(((((((....)))))))...))))...-... ( -28.10) >DroSim_CAF1 52202 101 - 1 CGCGAAUAUGUUCAACCUACAGC-----AAUCUCCGGGGAAAUUGCGAUGGCUACU-------ACUGGUCUUAUUGUAAUUUCGAUUCGCCCUCGCGAAUUUCACUCGCUC-AU- .((((..........(((..((.-----...))..)))((((((((((((((((..-------..)))))..)))))))))))(((((((....)))))))....))))..-..- ( -26.80) >DroEre_CAF1 50988 112 - 1 CGCGAACAUAUUCAACCUACAACCUAUUAAUCUCGAGGGAAAUUGCAAUUCCUACCCAUUCACGGUGGUCUUAUUGUUAUUUUAAUUCGC-CUCGUAAA-UUCACUCGCUU-AUA .((((.............................(((((((((.(((((..(((((.......)))))....))))).)))))......)-)))((...-...))))))..-... ( -18.70) >DroYak_CAF1 52446 113 - 1 CGCGAAUAUAUUCAACCUACAACCCAGUAAUCUCCAGGAAAAUUCCAACUUCUGCUCAUUCACGUUGGCCUAAUUGUAAUUUUAAUUCGC-CUCGUAAA-UUCACUCGCUUUUUU .((((...............................(((....)))...............(((..(((..(((((......))))).))-).)))...-.....))))...... ( -15.00) >consensus CGCGAAUAUGUUCAACCUACAGC__A__AAUCUCCGGGGAAAUUGCGAUGGCUACU_______ACUGGUCUUAUUGUAAUUUCGAUUCGCCCUCGCGAAUUUCACUCGCUU_AUU .((((.................................((((((((((((...(((..........)))..))))))))))))(((((((....)))))))....))))...... (-15.82 = -16.30 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:12 2006