Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,856,907 – 10,857,021 |
Length | 114 |
Max. P | 0.769826 |
Location | 10,856,907 – 10,857,021 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.19 |
Mean single sequence MFE | -42.28 |
Consensus MFE | -29.40 |
Energy contribution | -31.32 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.16 |
Mean z-score | -2.11 |
Structure conservation index | 0.70 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.769826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10856907 114 - 22407834 CAUCUUUGCAGCUGCUUCGCAAGGAAAGCAAGGGCCGCAUCACCUUGGUGGAUGUGAUGACCCAUUAUUGGGUGAAGGCGGGAAUGGCCGAAAGGGAGCUGCAGCUGCAGAAAC ....((((((((((((((....))).(((.....((((.((((((((((((..........))))))..))))))..))))......((....))..))))))))))))))... ( -49.90) >DroPse_CAF1 5190 111 - 1 U---CUUGUAGCUACUACGAAAGCAGAGUAAUGGCCGGAUCUCUUUGGUGGAUGUGAUGACCCAUCCUUGGGUUAAGGAGGGCAUGGCCGAGAGGGAAGCACAACUGCGGCUGA .---......(((.((.(....).)))))...((((...(((((((.(.....((.(((.(((.((((((...)))))))))))).))).))))))).(((....))))))).. ( -34.60) >DroSec_CAF1 5381 114 - 1 UAUCUUUGCAGCUGCUUCGCAAGGAAAGCAAGGGCCGCAUCACCUUGGUGGAUGUGAUGACCCACUAUUGGGUCAAGGCGGGAAUGGCCGAAAGGGAGCUGCAGCUGCAGAAAC ....((((((((((((((....))).(((....((((((((((....)).)))))..(((((((....))))))).)))........((....))..))))))))))))))... ( -52.80) >DroEre_CAF1 5528 114 - 1 UACCUUUGUAGCUGCUCCGCAAGGAUAGCAAGGGCCGAAUCACCUUGGUGGACGUGAUGACGCACUAUUGGGUGAAGGCGGGAAUGGCCGAAAGGGAACUGCAGCUCCAGAAAC ....((((.(((((((((....)))......(((((...(((((((((((..(((....))))))))..)))))).)))........((....))...)))))))).))))... ( -41.40) >DroYak_CAF1 5595 114 - 1 UACCUUUGUAGCUGCUUCGCAAGGAGAGCAAGGGCCGGAUCACCUUGGUGGAGGUGAUGACGCACUAUUGGGUCAAGGCGGGAAUGGCCGAAAGGGAACUGCAGCUCCAGAAAC ....((((.((((.((((....)))).(((...(((..((((((((....))))))))(((.((....)).)))..)))........((....))....))))))).))))... ( -40.40) >DroPer_CAF1 5288 111 - 1 U---CUUGUAGCUACUACGAAAGCAGAGUAAUGGCCGGAUCUCUUUGGUGGAUGUGAUGACCCAUCCUUGGGUUAAGGAGGGCAUGGCCGAGAGGGAAGCACAACUGCGGCUGA .---......(((.((.(....).)))))...((((...(((((((.(.....((.(((.(((.((((((...)))))))))))).))).))))))).(((....))))))).. ( -34.60) >consensus UA_CUUUGUAGCUGCUUCGCAAGGAGAGCAAGGGCCGGAUCACCUUGGUGGAUGUGAUGACCCACUAUUGGGUCAAGGCGGGAAUGGCCGAAAGGGAACUGCAGCUGCAGAAAC ....((((((((((((((....))).......(((((..((.((((............((((((....)))))))))).))...)))))...........)))))))))))... (-29.40 = -31.32 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:34 2006