Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,849,729 – 10,849,825 |
Length | 96 |
Max. P | 0.664003 |
Location | 10,849,729 – 10,849,825 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.26 |
Mean single sequence MFE | -13.10 |
Consensus MFE | -7.96 |
Energy contribution | -7.30 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.14 |
Mean z-score | -1.83 |
Structure conservation index | 0.61 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10849729 96 - 22407834 UUUCCCCCCACCAAUCCCCCCG---------AACACAACAUGAAAUAUUUAUAUUGUUAUAUCUAUAUAAUAAUUUCAAUUAGAUGUUUUGGGUUAUUUUUGUUU------ ........((..(((..(((.(---------((((.....((((((..((((((.(......).))))))..))))))......))))).)))..)))..))...------ ( -14.80) >DroSec_CAF1 83163 99 - 1 UUUUCC-CCACCACCACACCCU-----------CACAGCAUGAGAAAUUUAUAUUGCUAUAUCUAUAUAAUAAAUUCAAUUAGAUAUGUUGGCUUAUUUUUGUUCGAUGUU ......-...............-----------...(((((..(((.........((((((((((...............)))))))...))).........))).))))) ( -10.53) >DroSim_CAF1 90251 109 - 1 UUUUCC-CCACCACAACACCCUUCCUCAGUCUACACAGCAUGAAAUAUUUAUAUUGCUAUAUCUAUACAAUAAAUUCAAUUAGAUAUUUUGGCUUAUUUUUGUUC-AUGUU ......-.............................((((((((......(((..((((((((((...............)))))))...))).))).....)))-))))) ( -13.96) >consensus UUUUCC_CCACCACAACACCCU__________ACACAGCAUGAAAUAUUUAUAUUGCUAUAUCUAUAUAAUAAAUUCAAUUAGAUAUUUUGGCUUAUUUUUGUUC_AUGUU ..........(((.......................((((..............))))(((((((...............)))))))..)))................... ( -7.96 = -7.30 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:33 2006