Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,848,787 – 10,848,902 |
Length | 115 |
Max. P | 0.537121 |
Location | 10,848,787 – 10,848,902 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 76.27 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -19.96 |
Energy contribution | -19.77 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -0.61 |
Structure conservation index | 0.87 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10848787 115 - 22407834 AAGGUGCGAUUUAAUGCA----UUCCAUUUCAAUCCAUUCCAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGCCUGU ....(((((((.((((..----...))))..))))....((((((.(((............))).))))))))).((((((....((.....))..(((((.......))))))))))) ( -26.80) >DroVir_CAF1 114437 109 - 1 ---------UUUUAUUUAUUAAUGUUAUUUA-ACCAUUAACAGAUGGCACCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGCCUGU ---------............(((((.....-..........(((((.....))))).....((((((((......)))).))))))))).........((((((......)))))).. ( -23.30) >DroPse_CAF1 83228 100 - 1 GAG-------------------UUCUCUUUGAAACAACUUCAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGUCUGU ..(-------------------(..((((((...........(((((.....))))).....((((((((......)))).))))...........))))))..))............. ( -20.30) >DroWil_CAF1 130531 99 - 1 -AC-------------------UUUUCUAUAAUUUGUUUACAGAUGGCUCCUCCAUCAUAUAGCGAUUUGGGCAAACAAGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGUCUAU -..-------------------...........(((((....(((((.....))))).....((((((((......)))).)))).........)))))((((((......)))))).. ( -20.40) >DroMoj_CAF1 117650 109 - 1 ---------UUGUAUUUACUAAUAUUAUUUC-ACACUCAAUAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGCCUGU ---------((((..................-..........(((((.....))))).....((((((((......)))).))))..........))))((((((......)))))).. ( -22.50) >DroAna_CAF1 93570 98 - 1 GC---UCGAUUCUAUUCA----U--------------UUUCAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUCGGCCUGU ((---(.((......((.----.--------------.....(((((.....))))).....((((((((......)))).)))))).....)))))..(((((........))))).. ( -23.60) >consensus _A_______UU_UAUU_A____UUUUAUUUA_ACCAUUUACAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGCCUGU ..........................................(((((.....))))).....((((((((......)))).))))..............((((((......)))))).. (-19.96 = -19.77 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:32 2006