Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,846,819 – 10,846,918 |
Length | 99 |
Max. P | 0.812788 |
Location | 10,846,819 – 10,846,918 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -38.41 |
Consensus MFE | -35.80 |
Energy contribution | -35.42 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.24 |
Mean z-score | -1.56 |
Structure conservation index | 0.93 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10846819 99 + 22407834 UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGAUCUGGGUAUGUCGGUGUUUUGGCGGCCAUUACGGGCUGUAUGAAUAGGU .(((((((((((.((((((.((.....)).)))..(((.((.((((((....)))))).)).))).....))).)))))).)))))............. ( -42.00) >DroSec_CAF1 80237 99 + 1 UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGAUCCGGGUAUGUCGGCGUUUUGGCGGCCAUUGCAGGCGGUAUGAAUAGGU .(((.(((((((.((((((.((.....)).)))..(((.((.(((((......))))).)).))).....))).)))))).).)))............. ( -36.80) >DroSim_CAF1 87354 99 + 1 UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGAUCCGGGUAUGUCGGCGUUUUGGCGGCCAUUGCGGGCGGUAUGAAUAGGU .(((((((((((.((((((.((.....)).)))..(((.((.(((((......))))).)).))).....))).)))))).)))))............. ( -42.90) >DroEre_CAF1 81215 99 + 1 UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGGUCAGGGUAUGUCGGCGUGGUGGUGGCCAUUAUGGGCGGAAUGAAUAGGU .(((((((((((.(((((....((.....)).((.(((.((.(((((......))))).)).))).))))))).)))))).)))))............. ( -41.10) >DroYak_CAF1 83093 99 + 1 UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGGUCGGGGUAUGUAGGCGUGGUUUUGGCCAUUAUGGGCGGUAUGAAGAGGU .((((((((((((((((((((((....((((..((((......)))).))))........)))))))))))...)))))).)))))............. ( -42.60) >DroMoj_CAF1 115867 93 + 1 GGCCAGGAUGAUAACCACGCUUGAACAAAUCGCGGGCCAGUUUGCCCAAAUCAGCAUAAACAGGCGGC------GCCAUUUUUGGCCAAAUAAAUAAUU ((((((((.........((((((..(.....).((((......)))).............))))))..------.....))))))))............ ( -25.09) >consensus UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGAUCAGGGUAUGUCGGCGUUUUGGCGGCCAUUACGGGCGGUAUGAAUAGGU ((((((((((((..(((((.((.....)).)))))(((.((.(((((......))))).)).))).........)))))).))))))............ (-35.80 = -35.42 + -0.38)
Location | 10,846,819 – 10,846,918 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -30.88 |
Consensus MFE | -23.95 |
Energy contribution | -23.32 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.26 |
Mean z-score | -1.89 |
Structure conservation index | 0.78 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10846819 99 - 22407834 ACCUAUUCAUACAGCCCGUAAUGGCCGCCAAAACACCGACAUACCCAGAUCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA .............(((((...((((((((........(.......)((((((((((......))))).)))))......).))))))).....))))). ( -33.90) >DroSec_CAF1 80237 99 - 1 ACCUAUUCAUACCGCCUGCAAUGGCCGCCAAAACGCCGACAUACCCGGAUCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA .............(((((...((((((((.......((.......))(((((((((......))))).)))).......).))))))).....))))). ( -33.00) >DroSim_CAF1 87354 99 - 1 ACCUAUUCAUACCGCCCGCAAUGGCCGCCAAAACGCCGACAUACCCGGAUCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA .............(((((...((((((((.......((.......))(((((((((......))))).)))).......).))))))).....))))). ( -35.20) >DroEre_CAF1 81215 99 - 1 ACCUAUUCAUUCCGCCCAUAAUGGCCACCACCACGCCGACAUACCCUGACCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA .............((((...((((..........((((.(...(((......)))...).))))(((((...........)))))...))))..)))). ( -28.00) >DroYak_CAF1 83093 99 - 1 ACCUCUUCAUACCGCCCAUAAUGGCCAAAACCACGCCUACAUACCCCGACCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA .............((((...((((..........(((((............)))))....((((((((...........))).)))))))))..)))). ( -27.90) >DroMoj_CAF1 115867 93 - 1 AAUUAUUUAUUUGGCCAAAAAUGGC------GCCGCCUGUUUAUGCUGAUUUGGGCAAACUGGCCCGCGAUUUGUUCAAGCGUGGUUAUCAUCCUGGCC ............(((((...((((.------(((((..((((..((.(((((((((......))))).)))).))..)))))))))..))))..))))) ( -27.30) >consensus ACCUAUUCAUACCGCCCAUAAUGGCCGCCAAAACGCCGACAUACCCGGAUCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA .............((((...((((...................(((......))).....((((((((...........))).)))))))))..)))). (-23.95 = -23.32 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:24 2006