Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,844,171 – 10,844,281 |
Length | 110 |
Max. P | 0.588400 |
Location | 10,844,171 – 10,844,281 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 82.81 |
Mean single sequence MFE | -38.06 |
Consensus MFE | -26.49 |
Energy contribution | -26.93 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.60 |
Structure conservation index | 0.70 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588400 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10844171 110 - 22407834 GAAGCAACGGCUGCGCAACUUGUUUCGCCGGAACAAAAUGCGCGCACGGCCCACUACAGUGGCCAGUGAUGCGAAUAAGGAGCAGCCGGAGCCACCUAAGCA---GGAGCCAA ...((..((((((((((..((((((.....))))))..)))((((((((((.((....)))))).))).))).........)))))))..))..(((....)---))...... ( -43.80) >DroSec_CAF1 77599 110 - 1 GAAGCAACGAUUGCGUAACUUGUUUCGCCGGAACAAAAUGCGCGGCCGACCCACCACAGUGGCCAGUAAUCCGAAUAAGGAGCAGCCGGAGCCACCUAAGCC---GGAGCCAA ...((..((...(((((..((((((.....))))))..)))))(((....((((....))))((.((..(((......)))...)).)).)))........)---)..))... ( -31.20) >DroSim_CAF1 84701 110 - 1 GAAGCAACGAUUGCGCAACUUGUUUCGCCGGAACAAGAUGCGCGGCCGACCCACCACAGUGGCCAGUAAUCCGAAUAAGGAGCAGCCGGAGCCACCUAAGCC---GGAGCCAA ...((..((...(((((.(((((((.....))))))).)))))(((....((((....))))((.((..(((......)))...)).)).)))........)---)..))... ( -36.80) >DroYak_CAF1 80348 107 - 1 GAAGCAACGGCUGCGCAACUUGUUUCGCCGCAACAAGAUGCGCACCCGAGCCACCACAGUGCCGAAUAAGAAGGA------GUCUCCGGAGCCGGCGAAGCAAGAGGAGCCGA .......(((((.(....((((((((((((((......)))((.((.(((.(.((.................)).------).))).)).)).))))))))))).).))))). ( -40.43) >consensus GAAGCAACGACUGCGCAACUUGUUUCGCCGGAACAAAAUGCGCGCCCGACCCACCACAGUGGCCAGUAAUCCGAAUAAGGAGCAGCCGGAGCCACCUAAGCA___GGAGCCAA ...((..((..((((((.(((((((.....))))))).))))))..))..((((....))))...................))....((..((............))..)).. (-26.49 = -26.93 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:22 2006