Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,162,391 – 1,162,481 |
Length | 90 |
Max. P | 0.768858 |
Location | 1,162,391 – 1,162,481 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 90.74 |
Mean single sequence MFE | -32.98 |
Consensus MFE | -26.69 |
Energy contribution | -27.25 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.79 |
Structure conservation index | 0.81 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1162391 90 - 22407834 GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUCUGGCUGGGAAUGGGGGAGUGCUCCCAGAGCUCCCACUGCUCGCCCAUGCAAAUGGGC .....((((((((((..........((((.....((((((((.((((((....))))))....)))))..)))..)))).)))))))))) ( -35.10) >DroSec_CAF1 55907 90 - 1 GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUCUGGCUGGGAAUGGGGGAGUGCUCCCAGAGCUUCCAGUGCUCGCCCAUGCAAAUGGGC .....((((((((((..........((((......(((((((.((((((....))))))....))))))).....)))).)))))))))) ( -35.20) >DroSim_CAF1 50997 90 - 1 GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUUUGGCUGGGAAUGGGGGAGUGCUCCCAGAGCUCCCAGUGCUCGCCCAUGCAAAUGGGC .....((((((((((..........((((......(((((((.((((((....))))))....))))))).....)))).)))))))))) ( -38.10) >DroYak_CAF1 51210 81 - 1 GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUCUGGCCGGGAAUGGGGGAGUGCUCUC---------AGUGCUCAGCCAUGCAAAUGUGC ...((((..((((((..((((......))))..((((.(((..((((((....)))))---------)...))).)))).)))))))))) ( -23.50) >consensus GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUCUGGCUGGGAAUGGGGGAGUGCUCCCAGAGCUCCCAGUGCUCGCCCAUGCAAAUGGGC .....((((((((((.......((..((........))..))(((((.(((((((............))))))).))))))))))))))) (-26.69 = -27.25 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:11 2006