Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,832,472 – 10,832,582 |
Length | 110 |
Max. P | 0.574159 |
Location | 10,832,472 – 10,832,582 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 84.21 |
Mean single sequence MFE | -36.77 |
Consensus MFE | -25.48 |
Energy contribution | -25.45 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -2.24 |
Structure conservation index | 0.69 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10832472 110 - 22407834 GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUAUAGCUAAAAGCCAGCCUUUGUCCAUCUAUUGUUUUCCUUUCGUCGCU-CUCAGGCAUUUUGAGUGGAGCCGAAGGAU ...((((((((((.(((..(((((......))))).))).))))))))))..................(((((.((..(((-(.((..(.....)..))))))))))))). ( -36.30) >DroPse_CAF1 67161 111 - 1 CCCGGCUGGCUUUGAGUACAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUGCUGCUCCUGUUCCGGUGGCUACGAUCCUUAGGCAUUUGGAGUGGAUGGGGAGGGU (((((((((((((.((((((.(((....))).))).))).)))))))))).((((((..((........))..)).))))((((((..(((.....)))..))))))))). ( -42.00) >DroSec_CAF1 65955 99 - 1 GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUCCAUCUAUUGUUUUCCUUCCGUCGCU-CUCAGGCAUUUUGAGUGG----------- ...((((((((((.(((..(((((......))))).))).))))))))))...........................((((-(...........))))).----------- ( -28.60) >DroEre_CAF1 67082 110 - 1 GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUCCAUUUGUUGUUUUCCUUCCGUCGCU-CUCAGGCAUUUUGAGUGGAGCCGAAGGAG ...((((((((((.(((..(((((......))))).))).))))))))))..................((((((.((..(.-(((((.....))))).)..)).)))))). ( -37.70) >DroYak_CAF1 68845 110 - 1 GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUCCAUCUAUUGUUUUCCUACCGUCGCU-CUCAGGCAUUUUGAGUGGAGCCGAAGGAG ...((((((((((.(((..(((((......))))).))).))))))))))..................((((..((..(((-(.((..(.....)..)))))))).)))). ( -34.00) >DroPer_CAF1 66974 111 - 1 CCCGGCUGGCUUUGAGUACAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUGCUGCUCCUGUUCCGGUGGCUACGAUCCUUAGGCAUUUGGAGUGGAUGGGGAGGGU (((((((((((((.((((((.(((....))).))).))).)))))))))).((((((..((........))..)).))))((((((..(((.....)))..))))))))). ( -42.00) >consensus GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUCCAUCUAUUGUUUUCCUUCCGUCGCU_CUCAGGCAUUUUGAGUGGAGCCGAAGGAU .((((((((((((.(((..(((((......))))).))).))))))))))................................(((((.....))))).))........... (-25.48 = -25.45 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:18 2006