Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,828,565 – 10,828,664 |
Length | 99 |
Max. P | 0.717634 |
Location | 10,828,565 – 10,828,664 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 72.53 |
Mean single sequence MFE | -20.26 |
Consensus MFE | -11.78 |
Energy contribution | -12.82 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.13 |
Mean z-score | -1.62 |
Structure conservation index | 0.58 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10828565 99 - 22407834 GCCAAUAACUUUUUUUAUUGGUUG-GCUUUUGGUUAACUUUUUGUUGACAUUUGGCAUAAAAAGUUGGAAA---CACCUACGCA----UACAACUUUUAAAUAAGCU ((((((((......))))))))..-(((....((((((.....))))))....)))...((((((((....---..........----..))))))))......... ( -22.39) >DroSec_CAF1 61959 103 - 1 GCCAAUAACUUUUUUUAUUGGCUG-ACUUGUGGUUAACUUUUUGUUGACAUUUCGCAUAAAAAGUUGGGAA---CACCUACGCAUGCAUAUAACUUUUAAAUAAGCA ((((((((......)))))))).(-.(((((.((((((.....)))))).....((((.....((.((...---..)).))..)))).............)))))). ( -23.80) >DroSim_CAF1 68852 103 - 1 GCCAAUAACUUUUUUUAUUGGCUG-ACUUGUGGUUAACUUUUUGUUGACAUUUCGCAUAAAAAGUUGGGAA---CACCUAGGCAUGCAUAGAACUUUUAAAUAAGCA ((((((((......)))))))).(-.(((((.((((((.....)))))).....((((....((.((....---)).))....)))).............)))))). ( -23.60) >DroEre_CAF1 63236 95 - 1 GCCAAUAACUUU-UUUAUUG------CUUUUGGUUAACUUUCUGUUGACAUUUCACAUAAAACUUGGGAA----UACCUGCAA-CUUAAGCAACUUUACAAUAAGUC ............-....(((------(((..(((((((.....))))))(((((.((.......))))))----)........-)..)))))).............. ( -14.40) >DroYak_CAF1 64903 83 - 1 GCCAAUAACUUU-UUUAUUGGUUAGCCUUUUGGUUAACUUUUCGUUGAUGUUUCACAUAAGAAGUUGGAAAGUAAGCAUGCAA-C---------------------- ((((((((....-.))))))))(((((....)))))((((((((...(((.....))).......))))))))..........-.---------------------- ( -17.10) >consensus GCCAAUAACUUUUUUUAUUGGCUG_ACUUUUGGUUAACUUUUUGUUGACAUUUCGCAUAAAAAGUUGGAAA___CACCUACGCAC__AUACAACUUUUAAAUAAGCA ((((((((......))))))))...........(((((((((((((((....))).))))))))))))....................................... (-11.78 = -12.82 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:17 2006