| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,825,476 – 10,825,570 |
| Length | 94 |
| Max. P | 0.884290 |
| Location | 10,825,476 – 10,825,570 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 90.90 |
| Mean single sequence MFE | -22.70 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.60 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10825476 94 - 22407834 GCAAAGCUACACACAACCGUAAUUCAUAAGGAUUAGAUGGAUUUAUCAGUGAUUCAUGACCGAAGAGGUCAUGCAGA-ACUCGAAAUCAGCUUUC ..((((((...........((((((....))))))....(((((...(((..(.(((((((.....))))))).)..-)))..))))))))))). ( -24.60) >DroSec_CAF1 58926 95 - 1 GCAAAGCUACACACAGGCGUAAUUCAUAAGGAUUAGAUGGAUUUAUCAGUGAUUCAUGACCGAAGAGGUCAUGCAGAAACUCGAAAUCAGCUUUC ..((((((.....((..(.((((((....))))))).))(((((...(((..(((((((((.....))))))).))..)))..))))))))))). ( -24.20) >DroSim_CAF1 65840 95 - 1 GCAAAGCAACACACAGGCGUAAUUCAUAAGGAUUAGAUGGAUUUAUCAGUGAUUCAUGACCGAAGAGGUCAUGCAGAAACUCGAAAUCAGCUUUC ..(((((......((..(.((((((....))))))).))(((((...(((..(((((((((.....))))))).))..)))..))))).))))). ( -23.50) >DroEre_CAF1 59598 92 - 1 GCAAAGUUACACGCA--CGUAAUUCAUAAGGAUUAGAUGGAUUUAUCAGUGAAUCAUGACCGGAGAGGUCAUGCAAA-ACUCGAGAACAGCUUUC ..((((((.....((--..((((((....))))))..))......(((((....(((((((.....)))))))....-))).))....)))))). ( -20.10) >DroYak_CAF1 61882 92 - 1 GCAAAGCUACACACC--CGUAUUUCAUGAGGAUUAGCUGGAUUUAUCAGUGAUUCAUGACCAGAGAGGUCAUACAGA-ACUCGAAAAUAGCUUUC ..(((((((......--((...(((.((.((((((.((((.....))))))))))((((((.....)))))).))))-)..))....))))))). ( -21.10) >consensus GCAAAGCUACACACA__CGUAAUUCAUAAGGAUUAGAUGGAUUUAUCAGUGAUUCAUGACCGAAGAGGUCAUGCAGA_ACUCGAAAUCAGCUUUC ..((((((...........((((((....))))))....(((((...(((....(((((((.....))))))).....)))..))))))))))). (-19.08 = -19.60 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:16 2006