| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,824,109 – 10,824,200 |
| Length | 91 |
| Max. P | 0.866675 |
| Location | 10,824,109 – 10,824,200 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 86.41 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -17.61 |
| Energy contribution | -18.94 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.24 |
| Mean z-score | -3.47 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10824109 91 + 22407834 CACAUUUACAUUCCCCU--UUUUAUUCGCCUCGUCCAACGGGGCGUAUGAUAAAUGUGACAUAAAUUUCUGUGUAACUUCUAUAUUUGUUUUA (((((((((((......--.......(((((((.....))))))).))).))))))))(((((......)))))................... ( -21.94) >DroSec_CAF1 57558 92 + 1 CACAUAUAUAU-UCCCUUUUUUUAUUCGCCUCGUCCAACGGGGCGGAUGAUAAAUGUGACAUAAAUUUCUGUGUAACUUCUAUAUUUGUUUUA .(((.(((((.-.....(((.((((((((((((.....)))))))))))).))).((.(((((......))))).))...))))).))).... ( -24.80) >DroSim_CAF1 64504 93 + 1 CACAUUUAUAUUUCCCUUUUUUUAUUCGCCUCGUCCAACGGGGCGGAUGAUAAAUGUGACAUAAAUUUCUGUGUAACUUCUAUAUUUGUUUUA ((((((((.............((((((((((((.....))))))))))))))))))))(((((......)))))................... ( -25.51) >DroEre_CAF1 58235 91 + 1 CGCAUUUAUGUUUCCUU--UUUUAUUCGCCUCGUUCAACGGGGCGGAUGAUAAAUGUGACAUAAAUUUCUGUGUAACUUCUAUAUGUGUUUUA ((((((((((((.(.((--(.((((((((((((.....)))))))))))).))).).)))))))))....(((((.....))))))))..... ( -28.50) >DroWil_CAF1 89580 91 + 1 AAGAGACGUGUUUUGAA--UUUUGCUUUUGUCUGGCAACUGGGCGUAUGAUAAAUGUGACAUAAAUUUCUAUGUAACUUCUAUAUUUGCUUUG .(((((.(((((....(--(((......((((((....).)))))......))))..)))))...)))))....................... ( -11.80) >DroYak_CAF1 60502 91 + 1 CACAUUUAUGUUUCCUU--UUUUAUUCGCCUCGUUCAACGGGGCGGAUGAUAAAUGUGACAUAAAUUUCUGUGUAACUUCUAUAUUUGUUUUA ((((((((((((.(.((--(.((((((((((((.....)))))))))))).))).).))))))))....)))).................... ( -27.90) >consensus CACAUUUAUAUUUCCCU__UUUUAUUCGCCUCGUCCAACGGGGCGGAUGAUAAAUGUGACAUAAAUUUCUGUGUAACUUCUAUAUUUGUUUUA ((((((((.............((((((((((((.....))))))))))))))))))))(((((......)))))................... (-17.61 = -18.94 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:15 2006