Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,823,922 – 10,824,021 |
Length | 99 |
Max. P | 0.693387 |
Location | 10,823,922 – 10,824,021 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.36 |
Mean single sequence MFE | -21.69 |
Consensus MFE | -11.96 |
Energy contribution | -12.04 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.33 |
Mean z-score | -1.85 |
Structure conservation index | 0.55 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10823922 99 + 22407834 ----GUAUAAAUUUCCACCUCGAGGGGUGAAAAAAAAAAA---ACACAAUUCCCGCCGAGCUAAAAUUACCUAA-AAUAUUCAAAUGCUUGUAGCUGGAAACU---AGAA ----...........(((((....)))))...........---......((((.(((((((.............-...........)))))..)).))))...---.... ( -17.36) >DroSec_CAF1 57380 96 + 1 ----UUAUAAAUUUUCACCUCGAGGGGUGAAAAA---AAA---ACGCGAUUCCCGCCGAGCUAAAAUUACCUAA-AAUAUUCAAAUGCUUGUAGCUGGAAACU---AGAA ----.......(((((((((....))))))))).---...---......((((.(((((((.............-...........)))))..)).))))...---.... ( -21.66) >DroSim_CAF1 64328 94 + 1 ----GUAUAAAUUUCCACCUCUAGGGGUGGAA-----AAA---ACGCGAUUCCCGCCGAGCUAAAAUUACCUAA-AAUAUUCAAAUGCUUGUAGCUGGAAACU---AGAA ----.......(((((((((....))))))))-----)..---......((((.(((((((.............-...........)))))..)).))))...---.... ( -24.06) >DroEre_CAF1 58047 93 + 1 ----GUAUAAAUUUCCACGCAGAGGGGUGAAA------AA---ACGCGAUUCCCGCAGAGCUUAAAUUACCUAA-AAUAUUCAAAUGCUUGCAGCUGGAAACU---AUAA ----.((((..((((((.((...((((((...------..---.)))....)))(((.(((.............-...........)))))).)))))))).)---))). ( -18.16) >DroYak_CAF1 60313 94 + 1 ----GUAUAAAUUUCCACCUAGAGGGGUGGAA------AA---ACGCGAUUCCCGCAGAGCUAAAAUUACCUAAAAAUAUUCAAAUGCUUGCAGCUGGAAACU---AGAA ----.......(((((((((....))))))))------).---......((((.((.((((.........................))))...)).))))...---.... ( -22.01) >DroPer_CAF1 57741 99 + 1 CGCAGUUUGAAUUUGCAUGC-UACUCGUGGCC-----GGGGCCCCUGCUUUUGCGCAAAGUUUCAAUUAACUAA-AAUAUUCAAAUGCUUGCAGC----AACUGCGAGUA ....((((((((((((....-.....(.(((.-----...))).).((....))))))((((......))))..-...))))))))((((((((.----..)))))))). ( -26.90) >consensus ____GUAUAAAUUUCCACCUCGAGGGGUGAAA_____AAA___ACGCGAUUCCCGCAGAGCUAAAAUUACCUAA_AAUAUUCAAAUGCUUGCAGCUGGAAACU___AGAA ...............(((((....)))))....................((((.((.((((.........................))))...)).)))).......... (-11.96 = -12.04 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:14 2006